Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11n12f
(565 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0246 + 27136590-27138610,27138933-27139056,27139401-271396... 31 0.63
07_01_0547 + 4052618-4052659,4055575-4055741,4055839-4056556,405... 30 1.1
10_08_0518 + 18486315-18486462,18486495-18486712,18486763-184868... 30 1.5
02_02_0492 - 10907529-10907629,10907714-10907953,10908035-109080... 29 1.9
01_06_0716 - 31425189-31426460 28 4.5
04_04_0788 + 28064684-28066584,28066692-28066815,28066908-280672... 28 5.9
10_03_0031 + 7214010-7215450,7215534-7216913,7217007-7217386 27 7.8
06_03_1285 - 28993305-28993442,28993559-28993798,28993881-289939... 27 7.8
>02_05_0246 +
27136590-27138610,27138933-27139056,27139401-27139694,
27139776-27139978,27140307-27140589
Length = 974
Score = 31.1 bits (67), Expect = 0.63
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +2
Query: 14 QTVIGITNMRFVCIFVAALGLAAAYPKNDVVGANAIIQFLENPDEGESLDFEALILSMLE 193
Q V+ N+ +F+ L YP N V+ I+ + +PD GE +DF + + +E
Sbjct: 813 QVVVEEMNI-MTTVFLRYDNLKIYYP-NSVLATKPIMNYYRSPDMGEGIDFSVHVATPVE 870
Query: 194 R 196
+
Sbjct: 871 K 871
>07_01_0547 +
4052618-4052659,4055575-4055741,4055839-4056556,
4056678-4057114,4057241-4057315,4057490-4057673,
4057759-4057854,4057952-4058018,4058556-4058715,
4058808-4059199,4059254-4059300
Length = 794
Score = 30.3 bits (65), Expect = 1.1
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = +2
Query: 218 GSETLPVLDPFQLDRLSVDDQTIPLPGLRMTLEDLEVRKLSTFE 349
GS LP P Q D S D T P G+R L+ + RKL F+
Sbjct: 128 GSNDLP--QPGQFDSGSPDHNTTPCHGVRSDLKQGKCRKLQAFQ 169
>10_08_0518 +
18486315-18486462,18486495-18486712,18486763-18486808,
18487436-18487709,18487797-18488052
Length = 313
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/61 (29%), Positives = 33/61 (54%)
Frame = +2
Query: 278 QTIPLPGLRMTLEDLEVRKLSTFEINSLTFDIISVLRGLFGLSIDGEVPVIALDAGKYDL 457
QT+ L L +T+E+L +++ E + +DI V+R ++ L E+P+ D DL
Sbjct: 133 QTVKLYSLIVTVEELVLQQPGRAEADFGKYDIRRVVRTIYILFSRNEIPIAKEDQEIMDL 192
Query: 458 S 460
+
Sbjct: 193 A 193
>02_02_0492 - 10907529-10907629,10907714-10907953,10908035-10908098,
10908416-10908721,10909347-10909561,10909656-10909950,
10910493-10910597,10911112-10911180,10911433-10911519,
10911953-10913704,10914964-10915054,10915217-10915488
Length = 1198
Score = 29.5 bits (63), Expect = 1.9
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Frame = +1
Query: 415 RSTSHCVGRW*IRSQRDC-FGLHNIRQW*SENPRDPSSYQG---DSVDPLE 555
R C+G+ I C GLH++R S P+DP ++G +++DPLE
Sbjct: 1005 RIVDPCIGQVLIDGLDICTIGLHDLRTRLSIIPQDPVMFEGTLRNNIDPLE 1055
>01_06_0716 - 31425189-31426460
Length = 423
Score = 28.3 bits (60), Expect = 4.5
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = +2
Query: 212 ITGSETLPVLDPFQLDRLSVDDQTIP--LPGLRMTLEDLEVRKLSTFEINSLTFDIISVL 385
+ G+ + D L + + + +I +P TL +LEV L + +N +S +
Sbjct: 236 LNGNIPTSIGDLISLTTIDLSNNSISGRIPDTVSTLPELEVLNLGSNRLNGSIPQFLSEM 295
Query: 386 RGLFGLSIDG 415
RGL L+++G
Sbjct: 296 RGLKELNLEG 305
>04_04_0788 +
28064684-28066584,28066692-28066815,28066908-28067285,
28067286-28067488,28067615-28067897
Length = 962
Score = 27.9 bits (59), Expect = 5.9
Identities = 16/61 (26%), Positives = 30/61 (49%)
Frame = +2
Query: 14 QTVIGITNMRFVCIFVAALGLAAAYPKNDVVGANAIIQFLENPDEGESLDFEALILSMLE 193
Q V+ N+ IF+ L YP N + I+ + +PD G+++DF + + +E
Sbjct: 801 QVVVEEMNI-MTTIFLRYDNLKVYYP-NSQLAIQPIMNYYRSPDMGDAVDFSVHVATPVE 858
Query: 194 R 196
+
Sbjct: 859 K 859
>10_03_0031 + 7214010-7215450,7215534-7216913,7217007-7217386
Length = 1066
Score = 27.5 bits (58), Expect = 7.8
Identities = 20/64 (31%), Positives = 31/64 (48%)
Frame = +2
Query: 74 LAAAYPKNDVVGANAIIQFLENPDEGESLDFEALILSMLERFRQTMITGSETLPVLDPFQ 253
LA + P N + N ++ FL+N + S+ + L+ LE R + S T+P F
Sbjct: 499 LAGSIPSNTAMLKNVVMLFLQNNEFSGSIIEDIGNLTKLEHLRLSNNQLSSTVPP-SLFH 557
Query: 254 LDRL 265
LD L
Sbjct: 558 LDSL 561
>06_03_1285 -
28993305-28993442,28993559-28993798,28993881-28993961,
28994370-28994429,28994523-28994628,28994861-28994921,
28995198-28995246,28995475-28995599,28995809-28995947,
28996432-28996503,28996615-28996742,28997037-28997136,
28997757-28997897,28998116-28998232,28998505-28998609,
28999037-28999153
Length = 592
Score = 27.5 bits (58), Expect = 7.8
Identities = 21/87 (24%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Frame = +2
Query: 233 PVLDPFQLDRLSVDDQTIPLPGLRMTLEDLEVRKLSTFEINSLTFDIISVLR-GLFGLSI 409
PV+D F + V + +P + +D++ + S ++ + +I+ + GLS+
Sbjct: 475 PVIDTFNGQEVEVWPRITWIPRWGLIFKDVKAKVHSNSSVSQRSALVINGKNITIQGLSL 534
Query: 410 DGEVPVIALDAGKYDLS--VTALGFTI 484
DG + V A D K++++ + G+TI
Sbjct: 535 DGTLIVNAKDEAKFNVTGHIENKGWTI 561
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,143,153
Number of Sequences: 37544
Number of extensions: 303364
Number of successful extensions: 878
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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