Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11n12f
(565 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19932| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.21
SB_16683| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.21
SB_39068| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.65
SB_26166| Best HMM Match : Mito_carr (HMM E-Value=0) 31 0.65
SB_25955| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_51570| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_43064| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_46125| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_36683| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_38726| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_18678| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_2574| Best HMM Match : DUF217 (HMM E-Value=0.066) 27 8.0
SB_1004| Best HMM Match : CPSase_sm_chain (HMM E-Value=0) 27 8.0
SB_41896| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.0
SB_33716| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.0
>SB_19932| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2201
Score = 32.7 bits (71), Expect = 0.21
Identities = 19/50 (38%), Positives = 23/50 (46%)
Frame = +2
Query: 179 LSMLERFRQTMITGSETLPVLDPFQLDRLSVDDQTIPLPGLRMTLEDLEV 328
LSM QT S +LP Q D S +PLP + TLED E+
Sbjct: 1320 LSMSHYQSQTASQPSVSLPTTQNMQNDSDSAPGSPVPLPSRKRTLEDTEI 1369
>SB_16683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 378
Score = 32.7 bits (71), Expect = 0.21
Identities = 17/61 (27%), Positives = 33/61 (54%)
Frame = +2
Query: 113 NAIIQFLENPDEGESLDFEALILSMLERFRQTMITGSETLPVLDPFQLDRLSVDDQTIPL 292
+ +Q+ ++ E +A ++ L+++ Q+ T +LP L+P Q R+ + DQ I L
Sbjct: 162 SVFLQYARGCEQAEVQSDDADLVEALDQYEQSQ-TAPSSLPPLEPRQPSRVELLDQPIQL 220
Query: 293 P 295
P
Sbjct: 221 P 221
>SB_39068| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 288
Score = 31.1 bits (67), Expect = 0.65
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -1
Query: 154 LALIWIFQELDNCISANHVILRVRRSEPQSSYEYTNKTHICNPD 23
+ LIWIF +C+ + +++ R Q S E T +T +PD
Sbjct: 153 IRLIWIFYLFSSCMFMFALYIKIYRIAKQKSSEVTTETKYYHPD 196
>SB_26166| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 612
Score = 31.1 bits (67), Expect = 0.65
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = +2
Query: 377 SVLRGLFGLSIDGEVPVIALDAGKYDLSVTALGFTIYGNGEAKIRVIRPRIKAT 538
+++ LFGL +D VP IAL+ K + + + + I++ +PR K+T
Sbjct: 137 NLILNLFGLMVDASVPDIALEPDKTVKKINVY-LALKNSSQTIIQMFKPRRKST 189
>SB_25955| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +1
Query: 370 YNFSTSRTLRPFDRRRSTSHCVG 438
+N STS T+ PF+R S+SH +G
Sbjct: 127 FNISTSPTIYPFNRLDSSSHTIG 149
>SB_51570| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1950
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = -2
Query: 444 PASNAMTGTSPSIERPKSPRSTEIISNVKELISNVLSFLTSKSSRVIRSP 295
PA AM T +++ K P S + N + + +VL+ ++S RV++SP
Sbjct: 1898 PAKPAMPTTHKQLQQEKQP-SEKAPENTAQDVPDVLAEQRTRSGRVVKSP 1946
>SB_43064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 975
Score = 29.5 bits (63), Expect = 2.0
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Frame = -2
Query: 414 PSIERPKSPRSTEIISNVKELISNVLSFLTSKSSRVIRSPGSGIV*SSTERRSN*NGSKT 235
P+I P P STE ISN + +SN + +++ + + SP + TE SN +
Sbjct: 719 PNIIEPL-PNSTEPISNSPDPVSNNIEPVSNSTEPLSNSPEPPP--NITEPLSN-STEPL 774
Query: 234 GNVSDPV-IMVCLKRSSIERISASKSRLSPSSGFSKN 127
N++DP+ I+ +S E +S S +S S+ + N
Sbjct: 775 SNITDPLPIITEAVSNSPEPVSNSTEAVSTSNEPASN 811
>SB_46125| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1564
Score = 29.5 bits (63), Expect = 2.0
Identities = 27/114 (23%), Positives = 54/114 (47%), Gaps = 1/114 (0%)
Frame = +2
Query: 65 ALGLAAAYPKNDVVGANAIIQFLENPDEGESLDFEALILSMLERFRQTMITGSETLPVLD 244
+LG P+ + +++ + E + L+L++LE+ ++ + +L
Sbjct: 146 SLGALFDEPEFSITPGKDLMEMAKELFEVNTFQLLLLVLTILEKLCCREMSNQDASLILQ 205
Query: 245 PF-QLDRLSVDDQTIPLPGLRMTLEDLEVRKLSTFEINSLTFDIISVLRGLFGL 403
QL L V P R+ E+LEV T+++++ T ++S+LRG+F L
Sbjct: 206 TSGQLIDLVVCLSGANCP--RLISEELEVE--CTWDVSTATAALLSILRGVFAL 255
>SB_36683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 581
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +2
Query: 239 LDPFQLDRLSVDDQTIPLPGLRMTLEDLEVRKLSTF 346
+DP +R+S D + P+PG +T + +RKL +F
Sbjct: 387 IDPGHAERISED--SYPVPGSSLTAHSIPLRKLQSF 420
>SB_38726| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = +2
Query: 434 LDAGKYDLSVTALGFTIYGNGEAKIRVIRPRIKATLLIHLNIR 562
+DAG D S+ GF +Y NG RI ATL + R
Sbjct: 150 IDAGSDDKSLVHKGFRVYPNGNV---TFSTRISATLSCKMEFR 189
>SB_18678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 727
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = -1
Query: 553 QVDQQSRLDTRTDHADFRFTIAVYCEAQSSHAEIVFTSVQRND 425
++ LD T A++R I YC H E++ T ND
Sbjct: 268 EITLNGSLDRETI-AEYRLRILAYCTIYQDHTEVLITVTDVND 309
>SB_2574| Best HMM Match : DUF217 (HMM E-Value=0.066)
Length = 225
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/43 (25%), Positives = 25/43 (58%)
Frame = -1
Query: 559 DIQVDQQSRLDTRTDHADFRFTIAVYCEAQSSHAEIVFTSVQR 431
D++ +SR++ +H D +++VY + + S E +F+ +R
Sbjct: 104 DVRAQLKSRVNGDVNHNDSTISLSVYEQLKESSEEEIFSLTER 146
>SB_1004| Best HMM Match : CPSase_sm_chain (HMM E-Value=0)
Length = 2007
Score = 27.5 bits (58), Expect = 8.0
Identities = 25/111 (22%), Positives = 50/111 (45%), Gaps = 2/111 (1%)
Frame = +2
Query: 188 LERFRQTMITGSETLPVLDPFQLDRLSVDDQTIPLPGLRMTLEDLEVRKLSTFEINSLTF 367
+E+ R L V PF + ++ DDQ L++ +L V + F +L
Sbjct: 1484 MEKIRSICYRIGAALSVTGPFNMQLIAKDDQ------LKVIECNLRVSRSFPFVSKTLDT 1537
Query: 368 DIISV-LRGLFGLSIDGEVPVIALDA-GKYDLSVTALGFTIYGNGEAKIRV 514
D +++ R + GL+++ P + +D G+ + V F+ +A++ V
Sbjct: 1538 DFVAMATRVICGLTVE---PALDMDGRGRVGVKVPQFSFSRLAGADARLGV 1585
>SB_41896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 148
Score = 27.5 bits (58), Expect = 8.0
Identities = 16/58 (27%), Positives = 25/58 (43%)
Frame = +2
Query: 185 MLERFRQTMITGSETLPVLDPFQLDRLSVDDQTIPLPGLRMTLEDLEVRKLSTFEINS 358
ML + ++ + G +L F D +DD +IPLP ED + + E S
Sbjct: 77 MLFGYHESELIGKHITSILPDFYEDMDVIDDSSIPLPPFDYDDEDGVIHYIDGIEPRS 134
>SB_33716| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 922
Score = 27.5 bits (58), Expect = 8.0
Identities = 16/58 (27%), Positives = 25/58 (43%)
Frame = +2
Query: 185 MLERFRQTMITGSETLPVLDPFQLDRLSVDDQTIPLPGLRMTLEDLEVRKLSTFEINS 358
ML + ++ + G +L F D +DD +IPLP ED + + E S
Sbjct: 165 MLFGYHESELIGKHITSILPDFYEDMDVIDDSSIPLPPFDYDDEDGVIHYIDGIEPRS 222
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,431,191
Number of Sequences: 59808
Number of extensions: 339866
Number of successful extensions: 901
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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