Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11n12f
(565 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016435-2|AAB65877.2| 380|Caenorhabditis elegans Hypothetical ... 31 0.76
U32305-18|AAK18852.2| 719|Caenorhabditis elegans Hypothetical p... 29 1.7
AC024776-19|AAK68480.2| 398|Caenorhabditis elegans Hypothetical... 29 1.7
Z72504-5|CAA96602.2| 812|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z72504-4|CAH60755.1| 653|Caenorhabditis elegans Hypothetical pr... 29 2.3
X91045-1|CAA62505.1| 693|Caenorhabditis elegans let-653 protein. 29 2.3
Z98866-14|CAB11553.1| 524|Caenorhabditis elegans Hypothetical p... 29 3.1
U97194-9|AAB52452.1| 336|Caenorhabditis elegans Hypothetical pr... 29 3.1
AF016435-1|AAB65878.1| 474|Caenorhabditis elegans Hypothetical ... 29 3.1
Z68161-7|CAD36488.1| 1130|Caenorhabditis elegans Hypothetical pr... 27 7.0
U49795-1|AAB03859.1| 673|Caenorhabditis elegans DNA-binding pro... 27 7.0
U49794-1|AAB03858.1| 673|Caenorhabditis elegans lag-1 protein. 27 7.0
AF100663-8|AAM98006.1| 671|Caenorhabditis elegans Lin-12 and gl... 27 7.0
AF100663-7|AAC68978.3| 673|Caenorhabditis elegans Lin-12 and gl... 27 7.0
Z81091-5|CAB03142.1| 768|Caenorhabditis elegans Hypothetical pr... 27 9.3
AL021488-6|CAA16366.2| 272|Caenorhabditis elegans Hypothetical ... 27 9.3
>AF016435-2|AAB65877.2| 380|Caenorhabditis elegans Hypothetical
protein F59D6.2 protein.
Length = 380
Score = 30.7 bits (66), Expect = 0.76
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -1
Query: 517 DHADFRFTIAVYCEAQSSHAEIVFTSVQRNDWYFSVDRKAE 395
DH D +T++V + H E+ + N W F V+ K++
Sbjct: 56 DHFDEYYTVSVRIGTPAQHFEVALDTTSSNLWVFGVECKSQ 96
>U32305-18|AAK18852.2| 719|Caenorhabditis elegans Hypothetical
protein B0336.3 protein.
Length = 719
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/38 (39%), Positives = 26/38 (68%), Gaps = 4/38 (10%)
Frame = -2
Query: 489 PYIVKP-KAVTLRSYLPASNAMT---GTSPSIERPKSP 388
P++ K +A+T +SY+PAS A T T+P +++ K+P
Sbjct: 64 PFVDKVFEALTSKSYMPASTAPTSASATAPDLKKEKAP 101
>AC024776-19|AAK68480.2| 398|Caenorhabditis elegans Hypothetical
protein Y41D4B.6 protein.
Length = 398
Score = 29.5 bits (63), Expect = 1.7
Identities = 24/90 (26%), Positives = 41/90 (45%)
Frame = -2
Query: 402 RPKSPRSTEIISNVKELISNVLSFLTSKSSRVIRSPGSGIV*SSTERRSN*NGSKTGNVS 223
+ K S + +++ LIS++ +F++ S +I + S +E N G+K +
Sbjct: 198 KSKESNSDALGNSISRLISSLKNFISGGRSSIIPGISVTMSRSDSESEKNDEGNKNEENT 257
Query: 222 DPVIMVCLKRSSIERISASKSRLSPSSGFS 133
D I K S + I S R SP + FS
Sbjct: 258 DSGI---TKHSRLSEILGSMRR-SPPASFS 283
>Z72504-5|CAA96602.2| 812|Caenorhabditis elegans Hypothetical
protein C29E6.1a protein.
Length = 812
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -2
Query: 477 KPKAVTLRSYLPASNAMTGTSPSIERPKSPRST 379
KP VT + LP++ A T T + P SP++T
Sbjct: 542 KPTTVTSTTTLPSTTASTTTKTTTSTPTSPQTT 574
>Z72504-4|CAH60755.1| 653|Caenorhabditis elegans Hypothetical
protein C29E6.1b protein.
Length = 653
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -2
Query: 477 KPKAVTLRSYLPASNAMTGTSPSIERPKSPRST 379
KP VT + LP++ A T T + P SP++T
Sbjct: 383 KPTTVTSTTTLPSTTASTTTKTTTSTPTSPQTT 415
>X91045-1|CAA62505.1| 693|Caenorhabditis elegans let-653 protein.
Length = 693
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -2
Query: 477 KPKAVTLRSYLPASNAMTGTSPSIERPKSPRST 379
KP VT + LP++ A T T + P SP++T
Sbjct: 423 KPTTVTSTTTLPSTTASTTTKTTTSTPTSPQTT 455
>Z98866-14|CAB11553.1| 524|Caenorhabditis elegans Hypothetical
protein Y49E10.17 protein.
Length = 524
Score = 28.7 bits (61), Expect = 3.1
Identities = 29/84 (34%), Positives = 37/84 (44%)
Frame = -2
Query: 393 SPRSTEIISNVKELISNVLSFLTSKSSRVIRSPGSGIV*SSTERRSN*NGSKTGNVSDPV 214
S S+ +S SN+ S S+ RS GS SS+ RRS+ NGS + + S
Sbjct: 80 SKTSSSTVSCTSLGSSNISSSSRQPSNGSFRSSGSSNGSSSSSRRSS-NGSSSSSGSTSD 138
Query: 213 IMVCLKRSSIERISASKSRLSPSS 142
SS R S SR S SS
Sbjct: 139 NSSSNISSSSRRSSNGSSRSSSSS 162
>U97194-9|AAB52452.1| 336|Caenorhabditis elegans Hypothetical
protein C37A2.8a protein.
Length = 336
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +2
Query: 218 GSETLP-VLDPFQLDRLSVDDQTIPLPGLRMTLEDLEVRKLST 343
G E LP +++P + +D +IPLPG + T E+ R + +
Sbjct: 260 GLELLPEIVEPVAVPASQIDLNSIPLPGQKETPEERHARLMKS 302
>AF016435-1|AAB65878.1| 474|Caenorhabditis elegans Hypothetical
protein F59D6.3 protein.
Length = 474
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/41 (26%), Positives = 20/41 (48%)
Frame = -1
Query: 517 DHADFRFTIAVYCEAQSSHAEIVFTSVQRNDWYFSVDRKAE 395
DH D +T V + H ++ F + N W F V+ +++
Sbjct: 147 DHFDEYYTAGVRIGTPAQHFQVAFDTTSSNLWVFGVECRSQ 187
>Z68161-7|CAD36488.1| 1130|Caenorhabditis elegans Hypothetical protein
F20C5.2b protein.
Length = 1130
Score = 27.5 bits (58), Expect = 7.0
Identities = 25/123 (20%), Positives = 52/123 (42%)
Frame = +2
Query: 131 LENPDEGESLDFEALILSMLERFRQTMITGSETLPVLDPFQLDRLSVDDQTIPLPGLRMT 310
LEN + L++ +++ E + + +++ +P R S+ +I P RM
Sbjct: 784 LENNETMNELEYVDYLINKTEEMTRKLNESTDSDDYRNPLSSGRGSMTSSSINEP--RMF 841
Query: 311 LEDLEVRKLSTFEINSLTFDIISVLRGLFGLSIDGEVPVIALDAGKYDLSVTALGFTIYG 490
+ + + + I +L + R FG+ + + ++ LS G T+YG
Sbjct: 842 ISTMSTPRRTPSRIPALMTKSLHAPRK-FGIFMKFQKFLVDFQNYDRSLSTPQRGATVYG 900
Query: 491 NGE 499
+GE
Sbjct: 901 SGE 903
>U49795-1|AAB03859.1| 673|Caenorhabditis elegans DNA-binding
protein LAG-1 protein.
Length = 673
Score = 27.5 bits (58), Expect = 7.0
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Frame = -2
Query: 519 RITRIFASPLPYIVKPKAVTLR------SYLPASNAMTGTSPSIERPKSPRSTEIISNVK 358
+I I SP P + P A +R S+ ++ GT+ + SP +++ +
Sbjct: 86 KIDTISKSPTPELASPSAKRMRLSPSTSSHSDVASTSKGTNGQDQSKNSPTNSDPFYTIG 145
Query: 357 ELISNVLSFL-TSKSS 313
+ N SFL TS SS
Sbjct: 146 QSTPNTSSFLDTSNSS 161
>U49794-1|AAB03858.1| 673|Caenorhabditis elegans lag-1 protein.
Length = 673
Score = 27.5 bits (58), Expect = 7.0
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Frame = -2
Query: 519 RITRIFASPLPYIVKPKAVTLR------SYLPASNAMTGTSPSIERPKSPRSTEIISNVK 358
+I I SP P + P A +R S+ ++ GT+ + SP +++ +
Sbjct: 86 KIDTISKSPTPELASPSAKRMRLSPSTSSHSDVASTSKGTNGQDQSKNSPTNSDPFYTIG 145
Query: 357 ELISNVLSFL-TSKSS 313
+ N SFL TS SS
Sbjct: 146 QSTPNTSSFLDTSNSS 161
>AF100663-8|AAM98006.1| 671|Caenorhabditis elegans Lin-12 and glp-1
phenotype protein1, isoform b protein.
Length = 671
Score = 27.5 bits (58), Expect = 7.0
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Frame = -2
Query: 519 RITRIFASPLPYIVKPKAVTLR------SYLPASNAMTGTSPSIERPKSPRSTEIISNVK 358
+I I SP P + P A +R S+ ++ GT+ + SP +++ +
Sbjct: 84 KIDTISKSPTPELASPSAKRMRLSPSTSSHSDVASTSKGTNGQDQSKNSPTNSDPFYTIG 143
Query: 357 ELISNVLSFL-TSKSS 313
+ N SFL TS SS
Sbjct: 144 QSTPNTSSFLDTSNSS 159
>AF100663-7|AAC68978.3| 673|Caenorhabditis elegans Lin-12 and glp-1
phenotype protein1, isoform a protein.
Length = 673
Score = 27.5 bits (58), Expect = 7.0
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Frame = -2
Query: 519 RITRIFASPLPYIVKPKAVTLR------SYLPASNAMTGTSPSIERPKSPRSTEIISNVK 358
+I I SP P + P A +R S+ ++ GT+ + SP +++ +
Sbjct: 86 KIDTISKSPTPELASPSAKRMRLSPSTSSHSDVASTSKGTNGQDQSKNSPTNSDPFYTIG 145
Query: 357 ELISNVLSFL-TSKSS 313
+ N SFL TS SS
Sbjct: 146 QSTPNTSSFLDTSNSS 161
>Z81091-5|CAB03142.1| 768|Caenorhabditis elegans Hypothetical
protein F55H12.1 protein.
Length = 768
Score = 27.1 bits (57), Expect = 9.3
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -2
Query: 462 TLRSYLPASNAMTGTSPS-IERPKSPRSTEIISNVKELISNVLSFLTSK 319
T+++ + T SPS ++ K P T+ V+ I+N +SFL S+
Sbjct: 33 TMKTTVAPPTMKTTRSPSTMKTTKEPSMTQTTKTVQSTITNPVSFLDSE 81
>AL021488-6|CAA16366.2| 272|Caenorhabditis elegans Hypothetical
protein Y45F10A.3 protein.
Length = 272
Score = 27.1 bits (57), Expect = 9.3
Identities = 9/36 (25%), Positives = 17/36 (47%)
Frame = -1
Query: 142 WIFQELDNCISANHVILRVRRSEPQSSYEYTNKTHI 35
W+ C++ HV ++ + Y+Y NK H+
Sbjct: 79 WLIGNRKKCLAVVHVAQKLGYTVVSVGYDYANKDHV 114
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,752,777
Number of Sequences: 27780
Number of extensions: 253856
Number of successful extensions: 749
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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