Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n12f
         (565 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    24   1.2  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        24   1.2  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        24   1.2  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        24   1.2  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    23   1.6  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   4.9  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   6.5  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 561 RIFKWINRVALIRGRITRIFASPLPY 484
           RIF WI  VA + G +  I  +P  Y
Sbjct: 548 RIFLWIFTVACVLGTVLIILQAPSLY 573


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -2

Query: 246 GSKTGNVSD-PVIMVCLKRSSIERISASKSRLSPSSGFSKNWIIALAP 106
           GS + N ++ P + V  K SSI ++   +++ S  SG+  ++    AP
Sbjct: 463 GSGSTNFNERPAVAVVSKSSSINKLEDLRNKKSCHSGYKDSFAGWTAP 510


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -2

Query: 246 GSKTGNVSD-PVIMVCLKRSSIERISASKSRLSPSSGFSKNWIIALAP 106
           GS + N ++ P + V  K SSI ++   +++ S  SG+  ++    AP
Sbjct: 463 GSGSTNFNERPAVAVVSKSSSINKLEDLRNKKSCHSGYKDSFAGWTAP 510


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -2

Query: 246 GSKTGNVSD-PVIMVCLKRSSIERISASKSRLSPSSGFSKNWIIALAP 106
           GS + N ++ P + V  K SSI ++   +++ S  SG+  ++    AP
Sbjct: 463 GSGSTNFNERPAVAVVSKSSSINKLEDLRNKKSCHSGYKDSFAGWTAP 510


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +2

Query: 347 EINSLTFDIISVLRGLFGLSIDG 415
           EIN +TFDI    RGL  + IDG
Sbjct: 105 EINFITFDIPCEHRGLVSI-IDG 126


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 561 RIFKWINRVALIRGRITRIFASPLPY 484
           R+F W+  +A   G +  IF +P  Y
Sbjct: 483 RLFLWVFTLACTAGTLGIIFQAPSLY 508


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 526 TRTDHADFRFTIAV 485
           T  +HADF +TI +
Sbjct: 476 THLNHADFSYTIVI 489


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,717
Number of Sequences: 438
Number of extensions: 3511
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)