Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n12f
         (565 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g09430.1 68417.m01553 disease resistance protein (TIR-NBS-LRR...    34   0.057
At2g42620.1 68415.m05275 F-box family protein (ORE9) E3 ubiquiti...    30   1.2  
At5g56990.1 68418.m07113 expressed protein  ; expression support...    29   1.6  
At3g13090.1 68416.m01639 ABC transporter, putative similar to MR...    27   6.5  
At5g02920.1 68418.m00235 F-box family protein low similarity to ...    27   8.7  

>At4g09430.1 68417.m01553 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1039

 Score = 34.3 bits (75), Expect = 0.057
 Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
 Frame = +2

Query: 98  DVVGANAIIQFLENPDEGESLDFEALILSMLERFRQTMITGSETLPVLDPFQLDRLSVDD 277
           DV G+ ++++    PD  +S++ E LI+      RQT  + +  LP+    +L+ +  D 
Sbjct: 598 DVTGSTSLVEL---PDLSDSMNLEELIMEGCRSLRQTPWSLNR-LPLR---KLNMVKCDS 650

Query: 278 QTIPLPGLRMTLEDLEVRKLST----FEINSLTFDIISVLRGLFGLSIDGEVPV 427
               L GL +  +D    K S       IN L  D ++ L  L  LSI GE+ V
Sbjct: 651 ----LMGLLLVTDDHNQPKASRPSPYRHINLLLLDTVTALSSLTELSIQGEISV 700


>At2g42620.1 68415.m05275 F-box family protein (ORE9) E3 ubiquitin
           ligase SCF complex F-box subunit; identical to F-box
           containing protein ORE9 GI:15420162 from [Arabidopsis
           thaliana]
          Length = 693

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 21/53 (39%), Positives = 30/53 (56%)
 Frame = +2

Query: 179 LSMLERFRQTMITGSETLPVLDPFQLDRLSVDDQTIPLPGLRMTLEDLEVRKL 337
           LS+ ERF  T I GS +L  LD +      V+ +++ LPG  +  E L +RKL
Sbjct: 582 LSLWERFFLTGI-GSLSLSELDYWPPQDRDVNQRSLSLPGAGLLQECLTLRKL 633


>At5g56990.1 68418.m07113 expressed protein  ; expression supported
           by MPSS
          Length = 224

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +2

Query: 224 ETLPVLDPFQLDRLSVDDQTIPLPGLR 304
           ET P++DPF+LD  S +D+ I    LR
Sbjct: 72  ETRPIMDPFRLDVCSTNDEMIHGVALR 98


>At3g13090.1 68416.m01639 ABC transporter, putative similar to
            MRP-like ABC transporter [Arabidopsis thaliana]
            GI:2316016; contains Pfam profile: PF00005 ABC
            transporter
          Length = 1466

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
 Frame = +1

Query: 472  GLHNIRQW*SENPRDPSSYQG---DSVDPLE 555
            GLH++R   S  P+DP+ ++G    ++DPLE
Sbjct: 1288 GLHDLRSRLSIIPQDPTMFEGTIRSNLDPLE 1318


>At5g02920.1 68418.m00235 F-box family protein low similarity to
           ribosomal RNA apurinic site specific lyase [Triticum
           aestivum] GI:6505722; contains F-box domain Pfam:PF00646
          Length = 345

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 17/49 (34%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
 Frame = -2

Query: 441 ASNAMTGTSPSIERPKSPRSTEIISNV-KELISNVLSFLTSKSSRVIRS 298
           A+ A+   S   +RP   RS++ ISN+  E++ ++LSF+  +++ VIR+
Sbjct: 7   ATFAVGNPSHRFDRPLIRRSSDSISNLPDEILHHILSFI-PETNLVIRT 54


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,193,553
Number of Sequences: 28952
Number of extensions: 241979
Number of successful extensions: 760
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)