Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n11r
         (553 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0575 + 4601904-4602458                                           29   1.9  
04_01_0382 - 5076673-5077774,5078122-5078186                           29   1.9  
02_02_0282 - 8540726-8541106                                           29   1.9  
11_01_0591 - 4694710-4695270                                           29   3.3  
11_01_0587 - 4662277-4662837                                           29   3.3  
06_01_0609 + 4404287-4405023,4405496-4405631,4405724-4405876,440...    27   10.0 
06_01_0041 + 403634-403817,404154-404332,404431-404536,404620-40...    27   10.0 
01_07_0359 - 43042675-43042758,43042956-43043024,43043099-430431...    27   10.0 

>11_01_0575 + 4601904-4602458
          Length = 184

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
 Frame = +2

Query: 269 PRTRTALTRLPAGAVYLTLTARELVVAARLTTKLRKSLSLEVILPI-LKALDLSVD-LGS 442
           P  R A T  P   +YL   A +   A  + TKL  ++  + + P+ L+    SVD L +
Sbjct: 50  PEARKATTVGPLAELYLRAIANQTTEAKAMATKLLATMKGKGVPPVCLQQCTASVDTLSN 109

Query: 443 ATSLVDTATIAVNTNNR 493
           A +   +A+  VN   R
Sbjct: 110 ALAAFFSASADVNKKYR 126


>04_01_0382 - 5076673-5077774,5078122-5078186
          Length = 388

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +2

Query: 215 KVKPTPPPVRRTLANCVDPRTRTALTRLP 301
           K  PTPPP RR   N +D R +    RLP
Sbjct: 256 KKLPTPPPKRRLGINMLDGRNKLVEYRLP 284


>02_02_0282 - 8540726-8541106
          Length = 126

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -2

Query: 237 GGGVGFTFVNLQFVNAPRRGFSFTVQ 160
           GGGV  TF+  QFV +   GF   VQ
Sbjct: 12  GGGVKVTFIETQFVTSDAAGFKSLVQ 37


>11_01_0591 - 4694710-4695270
          Length = 186

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
 Frame = +2

Query: 269 PRTRTALTRLPAGAVYLTLTARELVVAARLTTKLRKSLSLEVILPI-LKALDLSVD-LGS 442
           P  R A T  P   +YL   A     A  + TKL  ++  + + P+ L+    SVD L +
Sbjct: 52  PEARKATTVGPLAELYLQAIANHTTEAKAMATKLLATMKGKGVPPVCLQQCTASVDTLSN 111

Query: 443 ATSLVDTATIAVNTNNR 493
           A +   +A+  VN   R
Sbjct: 112 ALAAFFSASADVNKKYR 128


>11_01_0587 - 4662277-4662837
          Length = 186

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
 Frame = +2

Query: 269 PRTRTALTRLPAGAVYLTLTARELVVAARLTTKLRKSLSLEVILPI-LKALDLSVD-LGS 442
           P  R A T  P   +YL   A     A  + TKL  ++  + + P+ L+    SVD L +
Sbjct: 52  PEARKATTVGPLAELYLQAIANHTTEAKAMATKLLATMKGKGVPPVCLQQCTASVDTLSN 111

Query: 443 ATSLVDTATIAVNTNNR 493
           A +   +A+  VN   R
Sbjct: 112 ALAAFFSASADVNKKYR 128


>06_01_0609 +
           4404287-4405023,4405496-4405631,4405724-4405876,
           4405985-4406128,4406224-4406375,4406453-4406552,
           4406653-4406775,4406876-4407037,4407190-4407247,
           4407324-4407502,4408294-4408402,4408567-4408637,
           4408891-4408986,4409727-4409803,4410983-4411066,
           4411473-4411607,4411744-4411819,4413072-4413167,
           4413580-4413671,4413745-4413868,4413966-4414052
          Length = 996

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 212 TKVKPTPPPVRRTLANCVDPRTRT 283
           T VKPTP P R+  A    P+T T
Sbjct: 78  TPVKPTPTPKRKRAAPSPSPKTPT 101


>06_01_0041 +
           403634-403817,404154-404332,404431-404536,404620-404936,
           405231-405605,406199-406283,406570-408066,408575-408738
          Length = 968

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -2

Query: 435 RSTDRSNALSIG-SITSSDRLLRSFVVSRAATTNSRAVNVRYTAP 304
           +STD   + S G  I SSDR   S V S    +    VN   TAP
Sbjct: 557 KSTDNKGSSSFGLHIGSSDRSHNSDVTSNGGVSGIAPVNKAETAP 601


>01_07_0359 -
           43042675-43042758,43042956-43043024,43043099-43043159,
           43043260-43043768,43044545-43045153,43045697-43045972,
           43046581-43046769,43047006-43047116,43047621-43047908,
           43047990-43048041,43048648-43048824,43049249-43049314,
           43049675-43049929,43050071-43050577,43050807-43050886,
           43050974-43051207
          Length = 1188

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 209 FTKVKPTPPPVRRTLANCVDPRTRTALTRLPAGA 310
           F+  +  P P+RR +A+C+ P      T  P  A
Sbjct: 32  FSSARKPPEPLRRAVADCLSPPAPHTHTHAPPPA 65


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,330,058
Number of Sequences: 37544
Number of extensions: 224112
Number of successful extensions: 656
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)