Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n11r
         (553 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54160| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_55935| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_20150| Best HMM Match : Pox_A32 (HMM E-Value=0.049)                 29   2.5  
SB_21496| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_58334| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  
SB_26289| Best HMM Match : TLD (HMM E-Value=0.08)                      27   7.7  

>SB_54160| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 871

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = +1

Query: 286 PDASTGRRRVPHVDSPRVSCSSTAHNKAP*ESIT*SNTSDTQSVRSISGSGVSHFISRH- 462
           P  S G++R    +S  +SC +T     P E+    +TS ++  ++  G  VSHF   H 
Sbjct: 411 PHVSAGQKR-DETES-EMSCKATGVRGEPSENGEEEDTSSSKESQASGGKSVSHFPPPHF 468

Query: 463 RDDRGQYEQ 489
           + D G+ ++
Sbjct: 469 KHDTGKPQE 477


>SB_55935| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1485

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +1

Query: 319  HVDSPRVSCSSTAHNKAP*ESIT*SNTSDTQS-VRSISGSGVSHFISRHRDDR 474
            H    +  C +TA  +   +  T   + D+ S  R++  S VSH +SRH D R
Sbjct: 960  HTSPGKQLCLATAGGRTADQGSTDCRSGDSASRSRTVQISAVSHGVSRHLDTR 1012


>SB_20150| Best HMM Match : Pox_A32 (HMM E-Value=0.049)
          Length = 849

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +1

Query: 295 STGRRRVPHVDSPRVSCSSTAHNKAP*ESIT*SNTSDTQS-VRSISGSGVSHFISRHRDD 471
           ST  RR    DS R    + A  +A  +  T   + D+ S  R++  S VSH +SRH D 
Sbjct: 707 STCYRRYRRRDSAR---KAAAGGRAADQGSTACRSGDSASRSRTVQISVVSHGVSRHLDT 763

Query: 472 RG 477
           RG
Sbjct: 764 RG 765


>SB_21496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1787

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = +2

Query: 65   NGENEFFVQTKKQKLRVFACKRPEYAF*RPQTCTVKLNPLRGAFTN*RFTKVKPTPPPVR 244
            NGE+E F+Q   +  R+   +  + +   P T       +RG       TK+  TPP   
Sbjct: 1211 NGESEKFMQILNKTERIATLEGKDKSTPHPATGVTPYEAMRGVSVR---TKLDYTPPTTE 1267

Query: 245  RT 250
            RT
Sbjct: 1268 RT 1269


>SB_58334| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 20/58 (34%), Positives = 30/58 (51%)
 Frame = +1

Query: 316 PHVDSPRVSCSSTAHNKAP*ESIT*SNTSDTQSVRSISGSGVSHFISRHRDDRGQYEQ 489
           P   + R+  S TA +KA   S+  S     +  +S+   GVSHFI R R D+ + E+
Sbjct: 265 PKQIAARILESHTALHKA---SLVESKMMYIRQWQSLPEFGVSHFIVRFRSDKPKKEE 319


>SB_26289| Best HMM Match : TLD (HMM E-Value=0.08)
          Length = 382

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -2

Query: 144 NAYSGR-LHAKTRSFCFFVCTKNSFSP 67
           N  SGR   + +RSF F +C KN + P
Sbjct: 273 NTMSGRGYQSSSRSFLFTLCNKNGYRP 299


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,365,859
Number of Sequences: 59808
Number of extensions: 256138
Number of successful extensions: 788
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)