Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n09f
         (543 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    26   4.1  
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    26   4.1  
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ...    25   7.2  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    25   7.2  
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p...    25   9.5  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   9.5  

>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +2

Query: 143 SPWATFGSSSVLVPYSPTSISCL-LPLVSLEPSTGP 247
           SP++T  S+S+   Y+  S+SC   P + L P+  P
Sbjct: 185 SPYSTTSSTSLYSLYNDISLSCSPEPYLPLSPTRSP 220


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
            reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -1

Query: 276  VRTETNTTSIGPVEGSRETSGNRQDMEVGEYGTSTLLDPNVAQGD 142
            V +    T +  V+G+ + S +   +EVG  G  T+L+P  A  D
Sbjct: 927  VESSNCITLMDNVDGNLQLSVSMPSIEVGTIGGGTVLEPQGAMLD 971


>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 797

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = -3

Query: 316 QVTHSRSSRLHFVCQNRDEYDEYRAGRRLQRNKWQQTGYGS 194
           QVT       H + Q +++ DE    + + + K+  TG+G+
Sbjct: 80  QVTADDLLEAHSIPQLKNKNDEVSQAKNIPKMKFNTTGFGA 120


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +1

Query: 178 GAVLTNFHILSVATCFSGAFYRPD 249
           G    NFH L VAT   G  Y PD
Sbjct: 239 GKTDNNFHFLLVATLCLGYTYMPD 262


>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 277

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -1

Query: 273 RTETNTTSIGPVEGSRETSGNRQDMEVGEYGTSTLLDPNVA 151
           R+ ++  S+ P E  + + G+R         TST +DP+VA
Sbjct: 157 RSSSHIQSLSP-ESKQTSDGHRPPSPTSITTTSTSIDPSVA 196


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = -3

Query: 370 QRKYRWPY-SWDRMSDGYWQVTHSRSSRLHFVCQNRDEYDEYRAGRRLQRNKW 215
           Q K+ + Y S   M D +  +  SRSSR+      +  + +Y  GR     KW
Sbjct: 207 QAKFGFQYDSMLNMYDFFMVLLDSRSSRMDAENALKSLHADYIGGRNANYRKW 259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,351,425
Number of Sequences: 5004
Number of extensions: 50004
Number of successful extensions: 129
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)