Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n09f
         (543 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0376 - 22474473-22476947                                         30   1.4  
06_03_0025 - 15577231-15577420,15577682-15577813,15578025-155781...    28   4.2  
02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,265...    28   4.2  
03_01_0594 - 4385291-4385503,4385647-4385829,4385944-4386117,438...    28   5.5  
01_05_0282 - 20347915-20348874,20348968-20349012,20349568-203498...    28   5.5  
05_03_0155 - 9002049-9002134,9002825-9004139                           27   9.7  
03_06_0662 + 35377974-35378270,35378354-35378623,35378795-353789...    27   9.7  

>02_04_0376 - 22474473-22476947
          Length = 824

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
 Frame = +2

Query: 422 SSFKEYMCPLA*ASS--SSVGETLRKEVQLPTITYTV 526
           SSF E++C +  +    S +GE L+K+V+  T+ YT+
Sbjct: 482 SSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTI 518


>06_03_0025 -
           15577231-15577420,15577682-15577813,15578025-15578173,
           15579012-15579071,15593208-15593297,15593604-15593871,
           15594517-15594608,15595355-15595441,15597333-15597440,
           15597709-15597822,15598253-15598420,15599442-15599579,
           15599699-15599908,15600986-15601237,15601965-15602111,
           15603327-15603443
          Length = 773

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
 Frame = +1

Query: 154 NVWIQQCAGAVLTNFHILSVATC------FSGAFYRPDTRRIRLGSDIRNEGGLIVNVL 312
           N++ ++    +L     L  A C      F GAFY PD+ +I +  +   +GG + NV+
Sbjct: 168 NIFEKEKRQQILNEMRTLCEACCYIGLVEFQGAFYMPDSGQISIALEYM-DGGSLANVI 225


>02_01_0369 +
           2649178-2655291,2655773-2656601,2656737-2657425,
           2657523-2657649,2657731-2657812,2658172-2658196
          Length = 2621

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -1

Query: 267 ETNTTSIGPVEGSRETSGNRQDMEVGEYGTSTLLDPNVAQGD-FNLSQTGA 118
           + +   + PV+   +  GN QD+ V E+G+   ++P    G+   +  TGA
Sbjct: 120 DVDNADVLPVQEGGDGGGNAQDVGVSEHGSLEHVNPGPGDGEGATIPVTGA 170


>03_01_0594 -
           4385291-4385503,4385647-4385829,4385944-4386117,
           4386213-4386373,4386470-4386551,4386626-4386658,
           4386755-4387161,4387237-4387381,4387483-4387587,
           4387704-4387826,4387908-4388027,4388118-4388237,
           4388569-4388775,4388857-4389036,4389151-4389285,
           4389382-4389519,4389630-4389728,4389832-4389951,
           4390029-4390091
          Length = 935

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -1

Query: 174 TLLDPNVAQGDFNLSQTGAVTDRHSSAKVVG*DAASCCEQ 55
           T+L   +A G  +LSQ GA+T R ++ + +      CC++
Sbjct: 298 TVLSVTLAIGSHHLSQQGAITKRMTAIEEMAGMDVLCCDK 337


>01_05_0282 -
           20347915-20348874,20348968-20349012,20349568-20349816,
           20350393-20350581,20351051-20351155,20351165-20351488,
           20351493-20351555
          Length = 644

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 427 LQGVHVPPRLSVELIGWGNTPQGGAVTDD 513
           L+G H   RL   L+GW N PQ   V +D
Sbjct: 55  LEGYHGITRLKWHLVGWQNRPQCLNVPED 83


>05_03_0155 - 9002049-9002134,9002825-9004139
          Length = 466

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 106 PISDRPSLAQVEVALGNVW 162
           P SDRP L  VE+  G+VW
Sbjct: 279 PFSDRPELHFVELPRGSVW 297


>03_06_0662 +
           35377974-35378270,35378354-35378623,35378795-35378973,
           35380073-35380116,35380295-35380384,35380472-35380588,
           35380679-35380803,35380883-35381155,35381253-35381386,
           35381518-35381604,35381714-35381831
          Length = 577

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +1

Query: 280 RNE-GGLIVNVLLANNHHSFDPTNMASDISVV 372
           RN+ GGLI   ++  +HH+ + + +  DISV+
Sbjct: 156 RNKYGGLITKSVMVGSHHNSNRSEVCHDISVM 187


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,434,186
Number of Sequences: 37544
Number of extensions: 382453
Number of successful extensions: 958
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)