Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11n09f
(543 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21831| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 1e-05
SB_4778| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_46573| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 2e-04
SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.009
SB_17803| Best HMM Match : SRCR (HMM E-Value=0) 35 0.049
SB_31846| Best HMM Match : Trypsin (HMM E-Value=0) 30 1.1
SB_33601| Best HMM Match : Metallophos (HMM E-Value=6.4e-19) 30 1.4
SB_59555| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_37284| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_35188| Best HMM Match : RVT_1 (HMM E-Value=2.3e-25) 29 3.2
SB_21033| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_39498| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_12340| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_54008| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_1077| Best HMM Match : rve (HMM E-Value=2.1e-17) 27 7.5
SB_39066| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_28931| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_9534| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_38639| Best HMM Match : Avirulence (HMM E-Value=1.5) 27 9.9
>SB_21831| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 551
Score = 46.8 bits (106), Expect = 1e-05
Identities = 35/139 (25%), Positives = 60/139 (43%), Gaps = 3/139 (2%)
Frame = +1
Query: 94 GTRVPISDRPSLAQVEVALGNVWIQQCAGAVLTNFHILSVATCFSGAFYRPDTRRIRLGS 273
GT D P AQ+ + + W +C G ++ +++ A C P +I+LG+
Sbjct: 288 GTTAAPHDWPWQAQILIHVDKSWNHRCGGTLIDTEWVVTAAHCVFQNI-EPSNYKIKLGA 346
Query: 274 DIR--NEGGLIVNVLLANNHHSF-DPTNMASDISVVRLSSAITLGGNIQQASVILQGVHV 444
R +EG L + V + H F + DI++++L++ +G I A + V
Sbjct: 347 HDRESSEGALTIPVTAIHMHTRFMTDGSYGYDIAIMKLANPAPIGHTISPACLPGLYDQV 406
Query: 445 PPRLSVELIGWGNTPQGGA 501
+ GWG T G A
Sbjct: 407 TSGTMCYVTGWGMTEYGNA 425
>SB_4778| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 867
Score = 43.6 bits (98), Expect = 1e-04
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Frame = +1
Query: 166 QQCAGAVLTNFHILSVATCFSGAFYRPDTRRIRLGSDIRNEGGLIVNVLLA----NNHHS 333
Q C G ++T +++ A C P + ++RLG+ R V + ++ +NH
Sbjct: 655 QFCGGTLVTPEWVITAAHCVVDK--NPASIQVRLGAQDRTSPDPSVEMRISIRSIHNHPD 712
Query: 334 F-DPTNMASDISVVRLSSAITLGGNIQQASVILQGVHVPPRLSVELIGWGNTPQGGA 501
+ P ++DI+++RLS L I A + VH P + GWG GG+
Sbjct: 713 YGSPKRSSNDIALLRLSRPTILTHRINLACMPNDTVHFPNGTMCYITGWGTLSSGGS 769
>SB_46573| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 335
Score = 42.3 bits (95), Expect = 2e-04
Identities = 36/146 (24%), Positives = 64/146 (43%), Gaps = 7/146 (4%)
Frame = +1
Query: 94 GTRVPISDRPSLAQVEVALGNVWIQQCAGAVLTNFHILSVATCFSGAFYRPDTRRI---- 261
GT PI+ P A + + Q C G+++ +L+ A C G +PD+ +
Sbjct: 33 GTEAPINGWPWQAMLLRSPNGD--QFCGGSLIDPGWVLTAAHCLVGE--QPDSALLGAHY 88
Query: 262 RLGSDIRNEGGL-IVNVLLANNHHSFDPTNMASDISVVRLSSAITLGGNIQQASVILQGV 438
R + E + + ++ N+HS P MA+DI++++L + L + +
Sbjct: 89 RSNKTVGTEKDIKVAQIIPHKNYHS--PIEMANDIALLKLENPANLVNGVGTVCLANNNT 146
Query: 439 HVPPRL--SVELIGWGNTPQGGAVTD 510
H+P + GWG+ GGA D
Sbjct: 147 HLPVDEFGKCYITGWGSLSSGGAAPD 172
>SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1864
Score = 37.1 bits (82), Expect = 0.009
Identities = 26/121 (21%), Positives = 54/121 (44%), Gaps = 3/121 (2%)
Frame = +1
Query: 133 QVEVALGNVWIQQCAGAVLTNFHILSVATCFSGAFYRPDTRRIRLG-SDIRNEG--GLIV 303
QV + L +Q+C GA++ +L+ A CF F P +++G SD+R G +
Sbjct: 1253 QVALTLSGNPVQRCGGALIAADWVLTAAHCFD-RFSMPPEWTVQVGVSDMRRRDGKGQSL 1311
Query: 304 NVLLANNHHSFDPTNMASDISVVRLSSAITLGGNIQQASVILQGVHVPPRLSVELIGWGN 483
++ H ++ ++ D++V++L + ++ V + + GWG
Sbjct: 1312 SIKAIFVHPQYNSSSHEHDLAVLQLQQPAEFNSRVSPICIV-ANEEVQAGRACAVAGWGQ 1370
Query: 484 T 486
+
Sbjct: 1371 S 1371
>SB_17803| Best HMM Match : SRCR (HMM E-Value=0)
Length = 1428
Score = 34.7 bits (76), Expect = 0.049
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 11/90 (12%)
Frame = +1
Query: 172 CAGAVLTNFHILSVATCFSGAFYRPDTRRIRLGSDIRNEGGL----------IVNVLLAN 321
C+G +++ H+++ A CF R D +RLG+ I G L + V +
Sbjct: 1114 CSGVLISARHVITAAHCFD-RIIRTDQIIVRLGAYIARSGRLDWGMGSRWEQEIAVAAIH 1172
Query: 322 NHHSFD-PTNMASDISVVRLSSAITLGGNI 408
H S+ PT A+DI+V++L+ L +
Sbjct: 1173 KHPSYQAPTRWANDIAVLKLARPAILNKRV 1202
>SB_31846| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 454
Score = 30.3 bits (65), Expect = 1.1
Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 10/122 (8%)
Frame = +1
Query: 166 QQCAGAVLTNFHILSVATCFSGAFYRPD---TRRIRLGSDIRNEGGLI-----VNVLLAN 321
Q C GA++ +++ + C + RP+ T I LG N+ G++ + +
Sbjct: 238 QFCGGALVHEDWVVTASHCINDI--RPEDYKTHIISLGG--HNKTGIMSVEQRIGIAKIY 293
Query: 322 NHHSFD--PTNMASDISVVRLSSAITLGGNIQQASVILQGVHVPPRLSVELIGWGNTPQG 495
H ++ P +D++++RL+ +Q + V PP + GWG G
Sbjct: 294 LHADYNLYPHQYNNDVALIRLAKPAIRTRYVQPVCLADGTVSFPPGTECWITGWGRLHSG 353
Query: 496 GA 501
GA
Sbjct: 354 GA 355
>SB_33601| Best HMM Match : Metallophos (HMM E-Value=6.4e-19)
Length = 675
Score = 29.9 bits (64), Expect = 1.4
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = -3
Query: 346 SWDRMSDGYWQVTHSRSSRLHFVCQNRD---EYDEYRAGRRLQRNKWQQTG 203
S R GY Q+ H + + C+ RD E +YR+ RRL+R K+ G
Sbjct: 332 SRSRSCFGYRQIHHKTTGSVWPKCRPRDIDPEGVDYRSRRRLRRRKYYSKG 382
>SB_59555| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 898
Score = 29.5 bits (63), Expect = 1.9
Identities = 20/113 (17%), Positives = 42/113 (37%), Gaps = 3/113 (2%)
Frame = +1
Query: 172 CAGAVLTNFHILSVATCFSGAFYRPDTRRIRLGSDIRNEGGLIVNVLLANN---HHSFDP 342
C G+++ +++ A C P + +G+ R + N H F
Sbjct: 57 CGGSLIAKDWVVTAAHCVDRN-PTPSGYTVVVGAHHRTGNTPVQNTFRLKQLFKHEQFSM 115
Query: 343 TNMASDISVVRLSSAITLGGNIQQASVILQGVHVPPRLSVELIGWGNTPQGGA 501
++ +DI++++L + + + G + GWG T GG+
Sbjct: 116 RHLKNDIALLQLHEPVKASDKVNTVCLPSSGSRAQAGARCYITGWGRTVGGGS 168
>SB_37284| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1031
Score = 28.7 bits (61), Expect = 3.2
Identities = 18/68 (26%), Positives = 29/68 (42%)
Frame = +1
Query: 298 IVNVLLANNHHSFDPTNMASDISVVRLSSAITLGGNIQQASVILQGVHVPPRLSVELIGW 477
I + + N+HS P A+DI+++ L L A + + +P + GW
Sbjct: 321 IQRIFMHPNYHS--PVQYANDIALLLLDRPARLDRYTNLACLAPRSSPLPDGTRCWISGW 378
Query: 478 GNTPQGGA 501
G GGA
Sbjct: 379 GRLSSGGA 386
>SB_35188| Best HMM Match : RVT_1 (HMM E-Value=2.3e-25)
Length = 467
Score = 28.7 bits (61), Expect = 3.2
Identities = 27/103 (26%), Positives = 54/103 (52%), Gaps = 2/103 (1%)
Frame = +1
Query: 106 PISDRPSLAQVEVALGNVWIQQCAGAVLTNFHILSVATCFSGAFYRPDTRRIRLGSDI-- 279
P+S+ P +++V + +Q +++N +S+ + + F+ +T I++ +DI
Sbjct: 25 PVSNLPMVSKV---IEKAVAKQLTKHIVSNNLDVSLKSSYK-KFHSTETALIKVQNDILC 80
Query: 280 RNEGGLIVNVLLANNHHSFDPTNMASDISVVRLSSAITLGGNI 408
+GG +V +LL + SFD + I + RLS + L GN+
Sbjct: 81 AIDGGNLVLMLLLDLSASFDTVD--HSILLSRLSLSYGLTGNV 121
>SB_21033| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 246
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/71 (22%), Positives = 29/71 (40%)
Frame = +1
Query: 268 GSDIRNEGGLIVNVLLANNHHSFDPTNMASDISVVRLSSAITLGGNIQQASVILQGVHVP 447
G+ R G + + H F DI+++RLS+ + L ++ + QG
Sbjct: 21 GAHYREHDGKELTISKITYHPGFSFATADHDIAILRLSAPVLLTSSVNTICLPSQGARAS 80
Query: 448 PRLSVELIGWG 480
+ + GWG
Sbjct: 81 LGGNCFISGWG 91
>SB_39498| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 531
Score = 28.3 bits (60), Expect = 4.3
Identities = 13/52 (25%), Positives = 20/52 (38%)
Frame = -3
Query: 358 RWPYSWDRMSDGYWQVTHSRSSRLHFVCQNRDEYDEYRAGRRLQRNKWQQTG 203
RWP D W + + + + + +Y AG +L R WQ G
Sbjct: 276 RWPIIADEKMARRWPIIAGEKLAIRWPIISGKKLAKYIAGEKLSRRCWQDVG 327
>SB_12340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 269
Score = 28.3 bits (60), Expect = 4.3
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +3
Query: 381 FSNHPWW*YTTSLSHPSRSTCAPSLKRRAHRLGKHSARRCSYRR*PIRSEP 533
F NHP+ +HP R+ +L R H L H R +R P R+ P
Sbjct: 164 FRNHPF------RNHPFRNHSFRNLPFRNHPLRNHPLRNHPFRNHPFRNHP 208
>SB_54008| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1940
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/65 (21%), Positives = 25/65 (38%)
Frame = -1
Query: 309 HIHDQAAFISYVRTETNTTSIGPVEGSRETSGNRQDMEVGEYGTSTLLDPNVAQGDFNLS 130
H D + R T T+++GP T + ++G +G N+S
Sbjct: 886 HSKDMPPIVREERQNTGTSNVGPNYTRSSTQAECMISSIHKHGPKEAFKEESIEGSRNMS 945
Query: 129 QTGAV 115
+G+V
Sbjct: 946 TSGSV 950
>SB_1077| Best HMM Match : rve (HMM E-Value=2.1e-17)
Length = 794
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 236 KAPEKQVATDRIWKLVSTAPAHCWIQTLPRATS 138
K P+ + DR+ K VS+ P + QT+P T+
Sbjct: 512 KLPKGSASIDRVRKWVSSQPVGGYTQTIPTPTT 544
>SB_39066| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 681
Score = 27.5 bits (58), Expect = 7.5
Identities = 17/62 (27%), Positives = 25/62 (40%)
Frame = -3
Query: 346 SWDRMSDGYWQVTHSRSSRLHFVCQNRDEYDEYRAGRRLQRNKWQQTGYGSW*VRHQHTA 167
+W R GY S S+R FVC + D R+ R + ++ W RH
Sbjct: 427 AWTREYHGYLMSPSSNSTRAQFVCVDADAGIVRRSPGRFKGDEDYNFRCNWWHYRHTIKT 486
Query: 166 GS 161
G+
Sbjct: 487 GN 488
>SB_28931| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1035
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 236 KAPEKQVATDRIWKLVSTAPAHCWIQTLPRATS 138
K P+ + DR+ K VS+ P + QT+P T+
Sbjct: 755 KLPKGSASIDRVRKWVSSQPVGGYTQTIPTPTT 787
>SB_9534| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 740
Score = 27.5 bits (58), Expect = 7.5
Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Frame = +1
Query: 253 RRIRLGSDIRNEGGLIVNVLLANNHHSFD------PTNMASDISVVRLSSAITLGGNIQQ 414
R + +G +I+ G I+ +++H FD T +DIS+ SS++ G +
Sbjct: 312 RNLFIGEEIKEVYGEIIRTT-SSDHLLFDGDAFVEKTASQADISMCTASSSLNKGRGERI 370
Query: 415 ASVILQGVHVPPRLSVELIGWGNTPQGGAVTDDNL 519
+V L PP W N+P+ G + +++
Sbjct: 371 MNVCLHREVPPPWEGDTADNWRNSPKFGGLGREDI 405
>SB_38639| Best HMM Match : Avirulence (HMM E-Value=1.5)
Length = 546
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +3
Query: 228 WSLLPARYSSYSSRF*HTK*RRLDRECVTCQ*PSLIRSHEY 350
+S+LP+RY ++++ F H + R VT Q P+ + Y
Sbjct: 390 YSVLPSRYKNHTASFRHAT-TTMQRPSVTLQQPNSVLPSRY 429
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,531,490
Number of Sequences: 59808
Number of extensions: 417211
Number of successful extensions: 1016
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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