Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n09f
         (543 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003134-1|AAB54144.1|  522|Caenorhabditis elegans Trypsin-like ...    31   0.41 
Z69791-3|CAA93662.1|  924|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z69791-2|CAA93661.2|  919|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z69791-1|CAA93660.1|  945|Caenorhabditis elegans Hypothetical pr...    30   1.2  
AL023493-2|CAD44137.1|  909|Caenorhabditis elegans Hypothetical ...    28   3.8  
AL023493-1|CAA18898.1|  947|Caenorhabditis elegans Hypothetical ...    28   3.8  
Z69718-4|CAA93537.1|  147|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AF125443-1|AAD12801.1|  783|Caenorhabditis elegans Hypothetical ...    28   5.0  
U23521-8|AAC46810.4|  505|Caenorhabditis elegans Hypothetical pr...    27   6.6  
Z81553-10|CAB04501.2|  668|Caenorhabditis elegans Hypothetical p...    27   8.7  
Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical p...    27   8.7  
U61948-8|AAB03147.2|  782|Caenorhabditis elegans Human hcf1 rela...    27   8.7  
U58757-2|AAC47915.2|  402|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like...    27   8.7  
AF072907-1|AAD12580.1|  782|Caenorhabditis elegans host cell fac...    27   8.7  
AC006762-4|AAU20835.1|  484|Caenorhabditis elegans Hypothetical ...    27   8.7  
AC006762-3|AAU20834.1|  614|Caenorhabditis elegans Hypothetical ...    27   8.7  
AC006762-2|AAF60558.2|  607|Caenorhabditis elegans Hypothetical ...    27   8.7  
AC006762-1|AAU87813.1|  514|Caenorhabditis elegans Hypothetical ...    27   8.7  

>AF003134-1|AAB54144.1|  522|Caenorhabditis elegans Trypsin-like
           protease protein 7 protein.
          Length = 522

 Score = 31.5 bits (68), Expect = 0.41
 Identities = 16/58 (27%), Positives = 23/58 (39%)
 Frame = +1

Query: 316 ANNHHSFDPTNMASDISVVRLSSAITLGGNIQQASVILQGVHVPPRLSVELIGWGNTP 489
           AN      P     D ++V L   +T   N+Q   V         +LS+E  G+G  P
Sbjct: 274 ANRTKKIPPQYYTDDFAIVHLYEELTFSSNVQSVCVADDETQPNDKLSLEYFGFGLNP 331


>Z69791-3|CAA93662.1|  924|Caenorhabditis elegans Hypothetical
           protein F39D8.1c protein.
          Length = 924

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
 Frame = -1

Query: 291 AFISYVRTETNTTSIG-PVEGSRETSGNRQDMEVGEYGTSTLLDPNVAQGDFNLSQ---- 127
           +F S   T TN  + G P  G + T+G     +   +  S+ +DPN+ Q  +   Q    
Sbjct: 703 SFQSTTPTTTNNFNNGQPSTGFQSTTGMPTTNDQSGFIASSTMDPNMPQAQYPSQQEIMT 762

Query: 126 -TGAVTDRHSSAKVV 85
            TG  +D+ +SA +V
Sbjct: 763 ATGQQSDQSNSANMV 777


>Z69791-2|CAA93661.2|  919|Caenorhabditis elegans Hypothetical
           protein F39D8.1b protein.
          Length = 919

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
 Frame = -1

Query: 291 AFISYVRTETNTTSIG-PVEGSRETSGNRQDMEVGEYGTSTLLDPNVAQGDFNLSQ---- 127
           +F S   T TN  + G P  G + T+G     +   +  S+ +DPN+ Q  +   Q    
Sbjct: 698 SFQSTTPTTTNNFNNGQPSTGFQSTTGMPTTNDQSGFIASSTMDPNMPQAQYPSQQEIMT 757

Query: 126 -TGAVTDRHSSAKVV 85
            TG  +D+ +SA +V
Sbjct: 758 ATGQQSDQSNSANMV 772


>Z69791-1|CAA93660.1|  945|Caenorhabditis elegans Hypothetical
           protein F39D8.1a protein.
          Length = 945

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
 Frame = -1

Query: 291 AFISYVRTETNTTSIG-PVEGSRETSGNRQDMEVGEYGTSTLLDPNVAQGDFNLSQ---- 127
           +F S   T TN  + G P  G + T+G     +   +  S+ +DPN+ Q  +   Q    
Sbjct: 721 SFQSTTPTTTNNFNNGQPSTGFQSTTGMPTTNDQSGFIASSTMDPNMPQAQYPSQQEIMT 780

Query: 126 -TGAVTDRHSSAKVV 85
            TG  +D+ +SA +V
Sbjct: 781 ATGQQSDQSNSANMV 795


>AL023493-2|CAD44137.1|  909|Caenorhabditis elegans Hypothetical
           protein H20J18.1b protein.
          Length = 909

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +1

Query: 409 QQASVILQGVHVPPRLSVELIGWGNTPQGGAVTDDN 516
           Q A+ I + +  PP  S  LI   N P GG V + N
Sbjct: 365 QPATSIQESLSAPPGASPNLIALVNQPNGGQVPNQN 400


>AL023493-1|CAA18898.1|  947|Caenorhabditis elegans Hypothetical
           protein H20J18.1a protein.
          Length = 947

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +1

Query: 409 QQASVILQGVHVPPRLSVELIGWGNTPQGGAVTDDN 516
           Q A+ I + +  PP  S  LI   N P GG V + N
Sbjct: 365 QPATSIQESLSAPPGASPNLIALVNQPNGGQVPNQN 400


>Z69718-4|CAA93537.1|  147|Caenorhabditis elegans Hypothetical
           protein W06D11.5 protein.
          Length = 147

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +1

Query: 70  SCISANNLGTRVPISDRPSLAQVEVALGNVWIQQCAGAVLTNFHIL 207
           SC+S         + DR  L +V + + N W+Q+      T FH+L
Sbjct: 52  SCLSRRESFVLQEVKDRQMLLKVGLKICNEWLQEGNSNRPTPFHLL 97


>AF125443-1|AAD12801.1|  783|Caenorhabditis elegans Hypothetical
           protein H32C10.3 protein.
          Length = 783

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +3

Query: 288 RRLDRECVTCQ*PSLIRSHEYGQRYFRCPS*FSNH-PW 398
           +++DR C TC  P    SH   Q   +C   F +H PW
Sbjct: 537 KQIDRYCFTCWIPKTSSSHHCSQ-CDKCVDGFDHHCPW 573


>U23521-8|AAC46810.4|  505|Caenorhabditis elegans Hypothetical
           protein F41C3.3 protein.
          Length = 505

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 12/59 (20%), Positives = 30/59 (50%)
 Frame = -1

Query: 285 ISYVRTETNTTSIGPVEGSRETSGNRQDMEVGEYGTSTLLDPNVAQGDFNLSQTGAVTD 109
           +S  + +++ + +  ++G R+T+        G+Y T+     N+ +GD  +++    TD
Sbjct: 26  VSQAQLQSDPSKLLFIDGDRKTTYGEFVKRTGQYATALTEKYNIKKGDRVMARVSKTTD 84


>Z81553-10|CAB04501.2|  668|Caenorhabditis elegans Hypothetical
           protein F56H6.12 protein.
          Length = 668

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 5/72 (6%)
 Frame = +1

Query: 295 LIVNVLLANNHHSFDPTNMASD---ISVVRLSSAITLG--GNIQQASVILQGVHVPPRLS 459
           L+ NV+  N  H F P N+ ++    S +    AI L     + +A    Q     PR  
Sbjct: 369 LVSNVIFINKDHIFKPVNLVTNNVITSNMTTDDAIRLNHEWTVTEAK-FFQNPSCVPRPD 427

Query: 460 VELIGWGNTPQG 495
            EL+ W    QG
Sbjct: 428 KELLEWCRHTQG 439


>Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical
           protein F15B9.7 protein.
          Length = 2577

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +1

Query: 226 SGAFYR--PDTRRIRLGSDIRNEGGLIVNVLLANNHHSFDPTNMASDISVV 372
           S  F+R  P +  I + SD+  E     +V++  + H+  P N ++ I V+
Sbjct: 723 SSQFFRIDPSSGDISVSSDLDREDRATFSVIVTASDHASPPLNTSTQIEVI 773


>Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical
           protein F15B9.7 protein.
          Length = 2577

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +1

Query: 226 SGAFYR--PDTRRIRLGSDIRNEGGLIVNVLLANNHHSFDPTNMASDISVV 372
           S  F+R  P +  I + SD+  E     +V++  + H+  P N ++ I V+
Sbjct: 723 SSQFFRIDPSSGDISVSSDLDREDRATFSVIVTASDHASPPLNTSTQIEVI 773


>U61948-8|AAB03147.2|  782|Caenorhabditis elegans Human hcf1 related
           protein 1 protein.
          Length = 782

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = -3

Query: 325 GYWQVTHSRSSRLHFVCQNRDEYDEYRAG 239
           G W +T  R   LH  C + D     RAG
Sbjct: 311 GCWNITEDRWVPLHLYCSDEDTIPRGRAG 339


>U58757-2|AAC47915.2|  402|Caenorhabditis elegans Hypothetical
           protein C01B10.3 protein.
          Length = 402

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 223 NKWQQTGYGSW*VRHQHTAGSKRCPGRLQ 137
           +++  TGY +    HQH+ GS  C G +Q
Sbjct: 107 DRFSSTGYINVRSGHQHSIGSNECDGFIQ 135


>AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like
           protein FMI-1 protein.
          Length = 2596

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +1

Query: 226 SGAFYR--PDTRRIRLGSDIRNEGGLIVNVLLANNHHSFDPTNMASDISVV 372
           S  F+R  P +  I + SD+  E     +V++  + H+  P N ++ I V+
Sbjct: 723 SSQFFRIDPSSGDISVSSDLDREDRATFSVIVTASDHASPPLNTSTQIEVI 773


>AF072907-1|AAD12580.1|  782|Caenorhabditis elegans host cell factor
           1 protein.
          Length = 782

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = -3

Query: 325 GYWQVTHSRSSRLHFVCQNRDEYDEYRAG 239
           G W +T  R   LH  C + D     RAG
Sbjct: 311 GCWNITEDRWVPLHLYCSDEDTIPRGRAG 339


>AC006762-4|AAU20835.1|  484|Caenorhabditis elegans Hypothetical
           protein Y42G9A.4c protein.
          Length = 484

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +1

Query: 268 GSDIRNEG-GLIVNVLLANNHHSFDPTNMASDISVVRLSSAITLGGNIQQASVI 426
           GS ++  G G     ++  +HHS  PT  AS +    LSS +  G     ASVI
Sbjct: 306 GSTVQENGLGPFGGNMVEQDHHSLQPTRTAS-VRSSSLSSYVGGGKRNSSASVI 358


>AC006762-3|AAU20834.1|  614|Caenorhabditis elegans Hypothetical
           protein Y42G9A.4b protein.
          Length = 614

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +1

Query: 268 GSDIRNEG-GLIVNVLLANNHHSFDPTNMASDISVVRLSSAITLGGNIQQASVI 426
           GS ++  G G     ++  +HHS  PT  AS +    LSS +  G     ASVI
Sbjct: 436 GSTVQENGLGPFGGNMVEQDHHSLQPTRTAS-VRSSSLSSYVGGGKRNSSASVI 488


>AC006762-2|AAF60558.2|  607|Caenorhabditis elegans Hypothetical
           protein Y42G9A.4a protein.
          Length = 607

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +1

Query: 268 GSDIRNEG-GLIVNVLLANNHHSFDPTNMASDISVVRLSSAITLGGNIQQASVI 426
           GS ++  G G     ++  +HHS  PT  AS +    LSS +  G     ASVI
Sbjct: 429 GSTVQENGLGPFGGNMVEQDHHSLQPTRTAS-VRSSSLSSYVGGGKRNSSASVI 481


>AC006762-1|AAU87813.1|  514|Caenorhabditis elegans Hypothetical
           protein Y42G9A.4d protein.
          Length = 514

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +1

Query: 268 GSDIRNEG-GLIVNVLLANNHHSFDPTNMASDISVVRLSSAITLGGNIQQASVI 426
           GS ++  G G     ++  +HHS  PT  AS +    LSS +  G     ASVI
Sbjct: 336 GSTVQENGLGPFGGNMVEQDHHSLQPTRTAS-VRSSSLSSYVGGGKRNSSASVI 388


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,296,419
Number of Sequences: 27780
Number of extensions: 294690
Number of successful extensions: 822
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)