Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n09f
         (543 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   3.5  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   3.5  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   6.1  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 11/43 (25%), Positives = 16/43 (37%)
 Frame = +1

Query: 277 IRNEGGLIVNVLLANNHHSFDPTNMASDISVVRLSSAITLGGN 405
           IRN  GL+            DP        + R+++  T G N
Sbjct: 383 IRNRSGLVSGSSTPGTGREHDPAKFPPSFRISRVAAYNTYGRN 425


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = -3

Query: 325 GYWQVTHSRSSRLHFVCQNRDEY--DEY 248
           G W+V  + SSR+ + C   D +  +EY
Sbjct: 102 GLWRVCVAISSRMEYECSRIDYFPNEEY 129


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -3

Query: 334 MSDGYWQVTHSRSSRLHFVCQNRD 263
           MSD +WQ+ H+ ++  + +   RD
Sbjct: 298 MSDLHWQLPHNSTNPPNILLYYRD 321


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,964
Number of Sequences: 438
Number of extensions: 3900
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15459066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)