Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n08r
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit Caf16|Schizos...    28   1.4  
SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5 |Schizo...    26   4.4  
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    25   7.7  

>SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit
           Caf16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 18/85 (21%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
 Frame = -3

Query: 246 IIFKKVSIDIIKFKTAELIN*CRRS----NQTIIITLHVFNGIHSFIXYTVALFCSFLFQ 79
           ++  +V++D+     A+L+N  +      N TI+   H+F+G+  +  + V L    +  
Sbjct: 150 LLLDEVTVDLDVLARADLLNFLQEETEVRNATIVYATHIFDGLAEWPTHLVHLSLGRIVD 209

Query: 78  *MKIKQFINITSTVQYXQNSFLMTC 4
              I +F  + +      ++ L TC
Sbjct: 210 YGPISKFGALMTRSSTGNSALLETC 234


>SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 411

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -2

Query: 187 LMSAIKSNYNYYFACF*WNTFIYXLYCSPLLFFSVSVNENQTVYKYYQYS 38
           L  AI + ++ Y   + W    + +       F  S+NEN+ + +YYQ S
Sbjct: 112 LHEAIVNLHSTYMTLY-WLGEFFGIQAKLFPLFQGSINENEKLSRYYQAS 160


>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = +2

Query: 425 LFSNNFNLFEIVFSGYYFIFV 487
           +F N FNLF+++ + Y F+++
Sbjct: 54  IFDNLFNLFKVINTTYTFLYL 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,123,391
Number of Sequences: 5004
Number of extensions: 35837
Number of successful extensions: 66
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)