Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n08f
         (565 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar...    29   0.36 
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    29   0.47 
SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr...    29   0.62 
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma...    27   1.9  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    25   7.7  
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc...    25   7.7  
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    25   7.7  

>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 598

 Score = 29.5 bits (63), Expect = 0.36
 Identities = 22/82 (26%), Positives = 35/82 (42%)
 Frame = +3

Query: 180 KPVSALLKELSDRCENQFLNKQIKSAIDQCPQDPRKEFKCLLFYDMANRLCLATNTSQIT 359
           KPV    +E ++  E+   N+ I    D  P   ++    +  +  +    L  N SQ +
Sbjct: 352 KPVPVQTEETTETLEDLIKNRIISKTFDDVP---KRAPVAVTEFRPSELFELNENKSQRS 408

Query: 360 LKEDYVAEINKEQTLDNVCSEA 425
           L E+Y  E  K+   D   SEA
Sbjct: 409 LAEEYEEEFLKKSNADTYKSEA 430


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 29.1 bits (62), Expect = 0.47
 Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
 Frame = +3

Query: 324 RLCLATNTSQITLKEDYVAEI--NKEQTLDNVCSEAKNWVLSKFTDYKLYSSKILQVGCS 497
           R+ L   +  I  K  +  E+  + ++ L  + S    + L  F + ++ +   L + C 
Sbjct: 527 RVALENASKLIKRKSAFGTELRDHADELLQTLISLQNRFDLMNFDEMQMTAIVELLLTCL 586

Query: 498 DVCGVDVWTNLDVNFY 545
           D+CG  + TNL V+ Y
Sbjct: 587 DICGPVICTNLFVSDY 602


>SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 319

 Score = 28.7 bits (61), Expect = 0.62
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 186 VSALLKELSDRCENQFLNKQIKSAIDQCPQDPRKE 290
           V +LLK +  +C + FL   +KS    C     KE
Sbjct: 98  VQSLLKIIEKKCSSDFLEANVKSQFTTCENKDSKE 132


>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 614

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 14/55 (25%), Positives = 30/55 (54%)
 Frame = -3

Query: 344 ISGQAQAVGHIIKQQTFKFFPRVLRTLIYGRLNLLIQKLIFTTI*KFFQQCRNWL 180
           I G + +V H I ++  + F + + +++ G  ++  +  I T   +FF QC++ L
Sbjct: 99  IKGSSSSVSHTINEEERREFIKHINSVLAGDPDVGSRVPINTETFEFFDQCKDGL 153


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 130 IVSTYRNILFYLAQTLVSESLKPELSVF 47
           I S++  +  Y+  +++  SLKP LSVF
Sbjct: 559 IDSSFVQLATYIDTSMIPSSLKPYLSVF 586


>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 899

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +3

Query: 273 QDPRKEFKCLLFYDMANRLCLATNTSQI 356
           +D    F C +F+DM N L   + T  +
Sbjct: 789 RDTTMTFTCFVFFDMFNALACRSETKSV 816


>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1010

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 139 IKRIVSTYRNILFYLAQTLVSESLKPELSVFLF 41
           +K  +STY+++LF +  TL+  S     SV  F
Sbjct: 326 LKLTMSTYQDVLFQIFNTLIRTSTSLRESVLDF 358


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,263,317
Number of Sequences: 5004
Number of extensions: 45620
Number of successful extensions: 120
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)