Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n08f
         (565 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0077 + 566895-567127,567207-567331,571204-571340,571437-57...    31   0.63 
01_01_1098 - 8691312-8692430,8692640-8693509,8694522-8696105,869...    30   1.1  
11_03_0084 + 9696368-9696554,9696648-9696718,9696821-9696901,969...    29   2.6  
06_03_0276 + 19087075-19087910,19089117-19089607,19089737-19091124     28   4.5  
11_06_0291 + 22008412-22012284                                         28   5.9  
01_01_0852 + 6652209-6652576,6653666-6654072,6654207-6654229           28   5.9  
11_06_0284 + 21909758-21913645                                         27   7.8  

>07_01_0077 +
           566895-567127,567207-567331,571204-571340,571437-571542,
           571635-571885,572018-572128,572209-572320,572626-572716,
           573168-573507,573678-573900,573946-574204,574274-574481,
           574572-574622,574712-574870,574956-575120,575322-575399,
           575732-576031,576107-576259,576871-576918,577019-577188,
           577738-577852,578462-578623,578789-578893,578969-579199,
           579277-579410,579484-579738,579822-580110,580214-580306,
           580395-580520,580646-580897
          Length = 1693

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +3

Query: 279 PRKEFKCLLFYDMANRLCLATNTSQITLKEDYVAEINKEQTLDNV-CSEAKNWVLSKFTD 455
           P  E  C+L   + N    + +TS      D +  I      D+V CS+ K W+L + TD
Sbjct: 499 PVLEVLCVLL--LQNAGLKSKDTSARCFAIDLLGGIASRLKRDSVICSKEKLWILQELTD 556

Query: 456 YKLYSSKILQVGC 494
            +   SKIL+  C
Sbjct: 557 TESDGSKILKNKC 569


>01_01_1098 -
           8691312-8692430,8692640-8693509,8694522-8696105,
           8696199-8696258,8696336-8696414,8696494-8696555,
           8697129-8697204,8697367-8697419,8698181-8698270,
           8698411-8698458
          Length = 1346

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 16/66 (24%), Positives = 36/66 (54%)
 Frame = +3

Query: 273 QDPRKEFKCLLFYDMANRLCLATNTSQITLKEDYVAEINKEQTLDNVCSEAKNWVLSKFT 452
           + P K+ +    + + + + +A  +S +   ED +A++   +T+DN+CS+  +W  S+F 
Sbjct: 671 ESPLKDNRATASWQVPSSV-IALVSSILRKGEDDLAQLYALRTIDNICSQGTDWT-SRFA 728

Query: 453 DYKLYS 470
              + S
Sbjct: 729 SQDVIS 734


>11_03_0084 +
           9696368-9696554,9696648-9696718,9696821-9696901,
           9697139-9697206,9697335-9697437,9700422-9700567,
           9700686-9700803,9701693-9701797,9702333-9702434,
           9702518-9702655,9703475-9703603,9703682-9703762,
           9703883-9703957,9704861-9705028,9705125-9705242,
           9705345-9705409,9705547-9705637,9705801-9705885,
           9706006-9706084,9706317-9706414,9707029-9707137,
           9707224-9707292,9707770-9707835,9707952-9708041,
           9708416-9708526
          Length = 850

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
 Frame = +3

Query: 9   FLTKIEVHAILNKNTESSGFKDSLTKVCAK*NKMFRYVLTIL--LINSCYRSLGVPSTPK 182
           F  KIE   + N + E   F+  ++KV  +  KM +  L+ L   IN+ YR L    T +
Sbjct: 747 FARKIE-ELMYNMSPEEIPFQVGMSKVDFR--KMLKSSLSGLDKTINAMYRKLQKNITAE 803

Query: 183 PVSALLKELSDRCENQFLNK 242
               LL  L D+C+ +FL+K
Sbjct: 804 E---LLPSLWDKCKKEFLDK 820


>06_03_0276 + 19087075-19087910,19089117-19089607,19089737-19091124
          Length = 904

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 198 LKELSDRCENQFLNKQIKSAIDQCPQD 278
           +K LSD    + L+++I S  DQCP D
Sbjct: 328 IKHLSDVDSRRLLHRRILSGEDQCPDD 354


>11_06_0291 + 22008412-22012284
          Length = 1290

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 219  NDLKVLSTMPKLASVWKAHLSCDSMNLL 136
            +DL+VL+ +PKL  V   H+SC    L+
Sbjct: 1178 DDLEVLAKLPKLQCVRLRHISCTESMLI 1205


>01_01_0852 + 6652209-6652576,6653666-6654072,6654207-6654229
          Length = 265

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 129 ILLINSCYRSLGVPSTPKP 185
           +L ++   RSLG PSTPKP
Sbjct: 226 VLPVHELIRSLGCPSTPKP 244


>11_06_0284 + 21909758-21913645
          Length = 1295

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 219  NDLKVLSTMPKLASVWKAHLSCDSMNLL 136
            +DL+VL+ +PKL  V   H+SC    L+
Sbjct: 1183 DDLEVLAKLPKLQCVRLQHISCTGSVLI 1210


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,289,191
Number of Sequences: 37544
Number of extensions: 248836
Number of successful extensions: 634
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)