Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n08f
         (565 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8119| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.86 
SB_5692| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.6  
SB_54885| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_35575| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_42820| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  

>SB_8119| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 20/57 (35%), Positives = 31/57 (54%)
 Frame = +3

Query: 144 SCYRSLGVPSTPKPVSALLKELSDRCENQFLNKQIKSAIDQCPQDPRKEFKCLLFYD 314
           SC+ ++G P+    +S L KEL    E+Q +NK+I  A++Q   D      C+L  D
Sbjct: 96  SCHDAVGKPNDVADLSPLYKELLHYQEDQ-VNKRINHAVNQ-DDDQSHGAICVLICD 150


>SB_5692| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 3   DVFLTKIEVHAILNKNTESSGFKDSLTKVCAK*NKMF 113
           D +  K++VH  L+KN +  G K  LT +  K N  F
Sbjct: 34  DAYCVKLKVHGFLDKNRD--GLKQDLTDLLCKTNSEF 68


>SB_54885| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2988

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +1

Query: 397  RPWTMCVQKRKTGSYQNLLTINFTQVKFYKLDALMFVVSTFGLI*MLTF 543
            R WT+ + +     Y N   I+  Q+ F  +  ++  +ST   I +L F
Sbjct: 2650 RKWTLKLHQENPNDYTNFQYISAWQMSFESILGILVFISTIKFIKLLRF 2698


>SB_35575| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 303

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 20/61 (32%), Positives = 29/61 (47%)
 Frame = +3

Query: 102 NKMFRYVLTILLINSCYRSLGVPSTPKPVSALLKELSDRCENQFLNKQIKSAIDQCPQDP 281
           N   +  L++ LI SC   + V S        L  LS +   +   K I+S ID+C Q+P
Sbjct: 65  NTDMKLYLSVFLIISCQCVVEVISGQTLQKRRL--LSKKVVRKVSVKSIRSCIDECHQEP 122

Query: 282 R 284
           R
Sbjct: 123 R 123


>SB_42820| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 312

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 23/81 (28%), Positives = 37/81 (45%)
 Frame = +3

Query: 42  NKNTESSGFKDSLTKVCAK*NKMFRYVLTILLINSCYRSLGVPSTPKPVSALLKELSDRC 221
           +KNT     K+ +     +  K++   L++ L  SC   + V S        L  LS + 
Sbjct: 52  HKNTSRENHKNKIKTRHVQDMKLY---LSVFLFVSCQCVVEVLSGETLQKRRL--LSKKV 106

Query: 222 ENQFLNKQIKSAIDQCPQDPR 284
             +   K I+S ID+C Q+PR
Sbjct: 107 VRKVSVKSIRSCIDECHQEPR 127


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,265,046
Number of Sequences: 59808
Number of extensions: 315994
Number of successful extensions: 670
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)