Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n08f
         (565 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80450-4|AAB37829.1|  926|Caenorhabditis elegans Hypothetical pr...    28   5.3  
AL032648-2|CAA21699.2|  621|Caenorhabditis elegans Hypothetical ...    28   5.3  
Z74473-2|CAA98949.2|  319|Caenorhabditis elegans Hypothetical pr...    27   7.0  
Z68299-2|CAA92611.2|  344|Caenorhabditis elegans Hypothetical pr...    27   7.0  
AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical...    27   7.0  
Z92781-5|CAB07179.2| 1391|Caenorhabditis elegans Hypothetical pr...    27   9.3  
Z77136-4|CAB00881.1|  526|Caenorhabditis elegans Hypothetical pr...    27   9.3  
AF059608-1|AAD13737.1|  526|Caenorhabditis elegans N2,N2-dimethy...    27   9.3  

>U80450-4|AAB37829.1|  926|Caenorhabditis elegans Hypothetical
           protein M01E11.3 protein.
          Length = 926

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +3

Query: 198 LKELSDRCENQFLNKQIKSAIDQCPQDPRKEFKCLLFYDMANRLCLATNTS 350
           +K++ +    QFLN +I  A+D   + P    K ++   M  ++  +TN S
Sbjct: 45  VKQIGELVIQQFLNSKISEALDPTMKIPTSAVKVVIVKRMIFQVISSTNIS 95


>AL032648-2|CAA21699.2|  621|Caenorhabditis elegans Hypothetical
           protein Y54G9A.3 protein.
          Length = 621

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 16/66 (24%), Positives = 26/66 (39%)
 Frame = +3

Query: 237 NKQIKSAIDQCPQDPRKEFKCLLFYDMANRLCLATNTSQITLKEDYVAEINKEQTLDNVC 416
           N  ++S++D  PQDP +    LL     + L    N     +KE   A++     + N  
Sbjct: 9   NGSLRSSLDDSPQDPEESETFLLGMVTGDGLGKMFNARYRNIKEKKAAKMTYRAMIYNCL 68

Query: 417 SEAKNW 434
                W
Sbjct: 69  ERPTGW 74


>Z74473-2|CAA98949.2|  319|Caenorhabditis elegans Hypothetical
           protein F56H9.1 protein.
          Length = 319

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +3

Query: 393 EQTLDNVCSEAKNWVLSKFTDYKLYSSKILQVGCSDVCGVDVWTNLDVNFYC 548
           ++T  N+ SEA    L + T  + +   ++Q     VC +DV  N+  +FYC
Sbjct: 213 KRTRGNLSSEANQ--LRRRTSIRFFVQSVIQ---DYVCSMDVVNNMVSHFYC 259


>Z68299-2|CAA92611.2|  344|Caenorhabditis elegans Hypothetical
           protein T04B2.4 protein.
          Length = 344

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +3

Query: 492 CSDVCGVDVWTNLDVNFYCKFYKW 563
           C    G+D+WT L   F   F KW
Sbjct: 75  CLSTAGIDIWTLLTNYFGAMFAKW 98


>AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical
           protein Y66D12A.14 protein.
          Length = 2870

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 356 NL*RISGQAQAVGHIIKQQTFKFFPRV 276
           +L R+ GQA A+G  + Q+TF FF  +
Sbjct: 580 SLRRVLGQAFAMGFALDQRTFPFFDTI 606


>Z92781-5|CAB07179.2| 1391|Caenorhabditis elegans Hypothetical protein
            F09C3.1 protein.
          Length = 1391

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
 Frame = +3

Query: 276  DPRKEFKCLLFYDMANRLCLATNTSQITLKEDY--------VAEINKEQTLDNVCSEAKN 431
            D R++F   LF  +   L L  N SQ+ L ED+        +A+  K  T DN+ S+   
Sbjct: 809  DNREQF---LFVRLLCEL-LGRNVSQLRLIEDFQSNYFMQAIADTMKLSTFDNILSDPCQ 864

Query: 432  WVLSKFTDYKLYSSKI 479
             ++ + TD+    S++
Sbjct: 865  SIIDELTDFVDEESRV 880


>Z77136-4|CAB00881.1|  526|Caenorhabditis elegans Hypothetical
           protein ZC376.5 protein.
          Length = 526

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 339 TNTSQITLKEDYVAEINKEQTLDNVCSEAKNW 434
           TNT   TL    + +  KE  +   C++ KNW
Sbjct: 471 TNTVNFTLHPGAIEQAKKENLVRFQCNKGKNW 502


>AF059608-1|AAD13737.1|  526|Caenorhabditis elegans
           N2,N2-dimethylguanosine tRNA methyltransferase protein.
          Length = 526

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 339 TNTSQITLKEDYVAEINKEQTLDNVCSEAKNW 434
           TNT   TL    + +  KE  +   C++ KNW
Sbjct: 471 TNTVNFTLHPGAIEQAKKENLVRFQCNKGKNW 502


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,418,681
Number of Sequences: 27780
Number of extensions: 254418
Number of successful extensions: 640
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)