Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n08f
         (565 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g17210.1 68414.m02097 expressed protein distantly related to ...    41   7e-04
At2g16290.1 68415.m01865 F-box family protein contains Pfam PF00...    28   3.7  
At1g75150.1 68414.m08729 expressed protein ; expression supporte...    28   3.7  
At1g55320.1 68414.m06319 acyl-activating enzyme 18 (AAE18) nearl...    28   3.7  
At3g12010.1 68416.m01488 expressed protein contains Prosite PS00...    27   6.5  
At1g77580.1 68414.m09033 myosin heavy chain-related low similari...    27   6.5  
At2g37060.2 68415.m04548 CCAAT-box binding transcription factor,...    27   8.7  
At2g37060.1 68415.m04547 CCAAT-box binding transcription factor,...    27   8.7  
At2g15630.1 68415.m01790 pentatricopeptide (PPR) repeat-containi...    27   8.7  

>At1g17210.1 68414.m02097 expressed protein distantly related to
           dentin phosphoryn [Homo sapiens] (GI:4322670)
          Length = 958

 Score = 40.7 bits (91), Expect = 7e-04
 Identities = 38/122 (31%), Positives = 55/122 (45%), Gaps = 5/122 (4%)
 Frame = +3

Query: 144 SCYRSLGVPSTPKPVSALLKELSDRCEN--QFLNKQI--KSAIDQCPQDPRKEFKCLLFY 311
           SC  SL V   P P SAL+    DRC+   QF +  I   SAIDQ     R +   LL +
Sbjct: 174 SCSESL-VQFPPTPPSALIGGYKDRCDGLLQFYSLPIVSPSAIDQMRASRRPQIDRLLAH 232

Query: 312 DMANRLCLATNTSQI-TLKEDYVAEINKEQTLDNVCSEAKNWVLSKFTDYKLYSSKILQV 488
              +      N S   T KE+  +  ++ Q L ++C     W L    D + +S++  + 
Sbjct: 233 ANDDLSFRMDNISAAETYKEEAFSNYSRAQKLISLCGWEPRW-LPNIQDCEEHSAQSARN 291

Query: 489 GC 494
           GC
Sbjct: 292 GC 293


>At2g16290.1 68415.m01865 F-box family protein contains Pfam
           PF00646: F-box domain;
          Length = 415

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 391 RNRPWTMCVQKRKTGSYQNLLTINFTQVKFYKLDA 495
           RN  WT  V+  +T +YQ+L+     + KFY LD+
Sbjct: 212 RNMSWTQVVEHPETYAYQDLVAF---KGKFYALDS 243


>At1g75150.1 68414.m08729 expressed protein ; expression supported
           by MPSS
          Length = 753

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
 Frame = +3

Query: 168 PSTPKPVSALLKELSDRCEN---QFLNKQIKSAIDQCPQD 278
           P   KP+S++L+++  R E    QFL+++   +ID C +D
Sbjct: 243 PLVRKPISSVLEKIRRRKEEISKQFLSRKKSKSIDICDRD 282


>At1g55320.1 68414.m06319 acyl-activating enzyme 18 (AAE18) nearly
           identical to acyl-activating enzyme 18 [Arabidopsis
           thaliana] GI:29893268; similar to acetyl-CoA synthetase
           [SP|P27095] from Methanothrix soehngenii; contains Pfam
           AMP-binding enzyme domain PF00501l; identical to cDNA
           acyl-activating enzyme 18 (At1g55320) GI: 29893267
          Length = 725

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
 Frame = -2

Query: 348 TY*WPSTSGWPYHKTA--NI*ILSAGLADTDLWPT*FAYSKTDFHNDLKVLSTMPKLASV 175
           TY WP+  GW    T   +  +  A LA     P    + K  F   + VL T+P L   
Sbjct: 397 TYCWPTNLGWVMGPTLMFSCFLTGATLALYSGSPLGRGFGK--FDAGVTVLGTVPSLVKT 454

Query: 174 WKAHLSCDSMN 142
           WK     + +N
Sbjct: 455 WKRTNCMEGLN 465


>At3g12010.1 68416.m01488 expressed protein contains Prosite
           PS00626: Regulator of chromosome condensation (RCC1)
           signature 2
          Length = 685

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +3

Query: 303 LFYDMANRLCLATNTSQI 356
           LFYD ANRL + T +SQ+
Sbjct: 37  LFYDDANRLLICTTSSQV 54


>At1g77580.1 68414.m09033 myosin heavy chain-related low similarity
           to SP|P08799 Myosin II heavy chain, non muscle
           {Dictyostelium discoideum}
          Length = 629

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
 Frame = +3

Query: 195 LLKELSDRCENQFL----NKQIKSA-IDQCPQDPRKEFKCLLFYDMANRLCLATNTSQIT 359
           L+ EL    E+Q +    + + KSA I+   +D RKE      +D   R C A       
Sbjct: 547 LVNELKAEVESQTIAMEADAKTKSAKIESLEEDMRKE---RFAFDELRRKCEALEEEISL 603

Query: 360 LKEDYVAEINKEQTLDNVCSEA 425
            KE+ +   NKE  +  VC ++
Sbjct: 604 HKENSIKSENKEPKIKQVCLQS 625


>At2g37060.2 68415.m04548 CCAAT-box binding transcription factor,
           putative similar to CAAT-box DNA binding protein subunit
           B (NF-YB) (SP:P25209) (GI:22380) [Zea mays]; contains
           Pfam PF00808 : Histone-like transcription factor
           (CBF/NF-Y) and archaeal histone
          Length = 173

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +3

Query: 162 GVPSTPKPVSALLKELSDRCENQFLNKQIKSAIDQCPQDPRK 287
           G+P+  K ++   KE+   C ++F++     A D+C ++ RK
Sbjct: 47  GLPANGK-IAKDAKEIVQECVSEFISFVTSEASDKCQREKRK 87


>At2g37060.1 68415.m04547 CCAAT-box binding transcription factor,
           putative similar to CAAT-box DNA binding protein subunit
           B (NF-YB) (SP:P25209) (GI:22380) [Zea mays]; contains
           Pfam PF00808 : Histone-like transcription factor
           (CBF/NF-Y) and archaeal histone
          Length = 173

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +3

Query: 162 GVPSTPKPVSALLKELSDRCENQFLNKQIKSAIDQCPQDPRK 287
           G+P+  K ++   KE+   C ++F++     A D+C ++ RK
Sbjct: 47  GLPANGK-IAKDAKEIVQECVSEFISFVTSEASDKCQREKRK 87


>At2g15630.1 68415.m01790 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 627

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -1

Query: 532 SKLVQTSTPQTSEHP-TCRILLE*SL*SVNFDRTQFFASEHTLSKVCSLLISAT 374
           S L QTSTP++   P T  ILLE      +   +Q+   EH   K+   L+S T
Sbjct: 30  SSLAQTSTPESVLPPITSEILLE------SIRSSQWHIVEHVADKLTPSLVSTT 77


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,355,839
Number of Sequences: 28952
Number of extensions: 221560
Number of successful extensions: 528
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)