Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n07r
         (566 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1827.06c |||aspartate semialdehyde dehydrogenase|Schizosacch...    31   0.16 
SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P...    26   4.4  
SPBC18E5.10 |||iron sulfur cluster assembly protein |Schizosacch...    25   5.9  
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe...    25   7.7  

>SPCC1827.06c |||aspartate semialdehyde
           dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 357

 Score = 30.7 bits (66), Expect = 0.16
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +3

Query: 222 RFTKVKPTPPPVRRTLANCVDPRTRTALTRLPAGAVYL 335
           +F K  PTP  VR  LAN V    +      P  A+Y+
Sbjct: 254 KFAKTSPTPDQVREVLANYVSEPQKLGCYSAPKQAIYV 291


>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
           Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 11/32 (34%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +1

Query: 61  RESLIKKMGRTNFLCKRKNKN-FVSLHVNVQN 153
           R  L+  +GR  F+CK K++  F+ + VN+++
Sbjct: 454 RVMLLTDVGRCAFVCKGKHERLFIEMEVNLKD 485


>SPBC18E5.10 |||iron sulfur cluster assembly protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 16/38 (42%), Positives = 18/38 (47%)
 Frame = +3

Query: 423 LKALDLSVDLGSATSLVDTATIAVNTNNRANFILQETC 536
           LKALD S+  GS   L D   I  +  N A F    TC
Sbjct: 340 LKALDSSLGTGSVIVLNDHDQIFESLLNFAKFYSTNTC 377


>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 58  IRESLIKKMGRTNFLCKRK 114
           +R+ +IKK    NFLC  K
Sbjct: 171 VRDKIIKKCAEVNFLCIHK 189


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,980,785
Number of Sequences: 5004
Number of extensions: 35700
Number of successful extensions: 96
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)