BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV11n07f (600 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_54160| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6 SB_55935| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2 SB_20150| Best HMM Match : Pox_A32 (HMM E-Value=0.049) 29 2.9 SB_21496| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0 SB_58334| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8 SB_26289| Best HMM Match : TLD (HMM E-Value=0.08) 27 8.8 >SB_54160| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 871 Score = 29.9 bits (64), Expect = 1.6 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 1/69 (1%) Frame = -3 Query: 265 PDASTGRRRVPHVDSPRVSCSSTAHNKAP*ESIT*SNTSDTQSVRSISGSGVSHFISRH- 89 P S G++R +S +SC +T P E+ +TS ++ ++ G VSHF H Sbjct: 411 PHVSAGQKR-DETES-EMSCKATGVRGEPSENGEEEDTSSSKESQASGGKSVSHFPPPHF 468 Query: 88 RDDRGQYEQ 62 + D G+ ++ Sbjct: 469 KHDTGKPQE 477 >SB_55935| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1485 Score = 29.5 bits (63), Expect = 2.2 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Frame = -3 Query: 232 HVDSPRVSCSSTAHNKAP*ESIT*SNTSDTQS-VRSISGSGVSHFISRHRDDR 77 H + C +TA + + T + D+ S R++ S VSH +SRH D R Sbjct: 960 HTSPGKQLCLATAGGRTADQGSTDCRSGDSASRSRTVQISAVSHGVSRHLDTR 1012 >SB_20150| Best HMM Match : Pox_A32 (HMM E-Value=0.049) Length = 849 Score = 29.1 bits (62), Expect = 2.9 Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Frame = -3 Query: 256 STGRRRVPHVDSPRVSCSSTAHNKAP*ESIT*SNTSDTQS-VRSISGSGVSHFISRHRDD 80 ST RR DS R + A +A + T + D+ S R++ S VSH +SRH D Sbjct: 707 STCYRRYRRRDSAR---KAAAGGRAADQGSTACRSGDSASRSRTVQISVVSHGVSRHLDT 763 Query: 79 RG 74 RG Sbjct: 764 RG 765 >SB_21496| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1787 Score = 28.3 bits (60), Expect = 5.0 Identities = 18/62 (29%), Positives = 27/62 (43%) Frame = -1 Query: 486 NGENEFFVQTKKQKLRVFACKRPEYAF*RPQTCTVKLNPLRGAFTN*RFTKVKPTPPPVR 307 NGE+E F+Q + R+ + + + P T +RG TK+ TPP Sbjct: 1211 NGESEKFMQILNKTERIATLEGKDKSTPHPATGVTPYEAMRGVSVR---TKLDYTPPTTE 1267 Query: 306 RT 301 RT Sbjct: 1268 RT 1269 >SB_58334| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 511 Score = 27.5 bits (58), Expect = 8.8 Identities = 20/58 (34%), Positives = 30/58 (51%) Frame = -3 Query: 235 PHVDSPRVSCSSTAHNKAP*ESIT*SNTSDTQSVRSISGSGVSHFISRHRDDRGQYEQ 62 P + R+ S TA +KA S+ S + +S+ GVSHFI R R D+ + E+ Sbjct: 265 PKQIAARILESHTALHKA---SLVESKMMYIRQWQSLPEFGVSHFIVRFRSDKPKKEE 319 >SB_26289| Best HMM Match : TLD (HMM E-Value=0.08) Length = 382 Score = 27.5 bits (58), Expect = 8.8 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%) Frame = +2 Query: 407 NAYSGR-LHAKTRSFCFFVCTKNSFSP 484 N SGR + +RSF F +C KN + P Sbjct: 273 NTMSGRGYQSSSRSFLFTLCNKNGYRP 299 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,262,737 Number of Sequences: 59808 Number of extensions: 273998 Number of successful extensions: 804 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 717 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 803 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1451595000 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -