Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n06r
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    29   0.93 
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom...    28   1.6  
SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ...    27   2.8  
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy...    27   2.8  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    27   3.8  
SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces pomb...    26   5.0  
SPAC750.03c |||methyltransferase |Schizosaccharomyces pombe|chr ...    26   6.6  
SPBC1348.04 |||methyltransferase |Schizosaccharomyces pombe|chr ...    26   6.6  
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   6.6  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    25   8.7  
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3...    25   8.7  
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy...    25   8.7  

>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 28.7 bits (61), Expect = 0.93
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +2

Query: 62  RHWNCSFQKTQCLP-THFGXRQGHPSQYYRSHGHHPGPNRRRICDQSRRDH 211
           +H+  S++ ++    +H+  +  H S+Y R+    PG N     DQS   H
Sbjct: 187 KHYENSYRPSRSQNNSHYNDKSFHRSRYSRARSRSPGSNISEYSDQSPPYH 237


>SPAC23C11.01 |||ER membrane protein, ICE2
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -1

Query: 514 PVVVSQVKYLMFTLPLTIPNSLRRITTRM*ASYE*HMPSTSAQISSRV 371
           P ++  V YL+ T+  T+P +L  I   M A+ +   PS  A  + R+
Sbjct: 288 PNILQSVHYLISTISATLPRTLYNIVLFMVAAAKTVAPSVFATFAFRI 335


>SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = -1

Query: 598 PTTTTFQLLPVSMENSTILHTVALSLDLPVVVSQVKYLMFT--LPLTIPNSL 449
           P+  T  +L      ++IL T+  SL   +VVS   Y +FT  LP T   S+
Sbjct: 89  PSKKTLVVLGAGWGATSILRTIDTSLFNVIVVSPRNYFLFTSLLPSTATGSV 140


>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
 Frame = -1

Query: 151 TTIILTWVPLPXSKMRW*ALCLLERAI-------PMTPTPVVLTSISSFTEW 17
           T+I+L W PL  S  R  +LCL    +       PMT     L+ +S  TE+
Sbjct: 93  TSIVLEWDPLQLSTARLKSLCLYRNNVRVLNISNPMTTHNAKLSGLSLDTEY 144


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = +1

Query: 277 PSDALPP*TVVPHPSRSTKIPWGITTPCWIIAPCWI 384
           PSDA    T VP  + S   PW  TTP     P W+
Sbjct: 21  PSDAQSSPTFVPSANPSLTTPWLQTTPS-ANRPTWL 55


>SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 240

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +2

Query: 428 HPCRNSPQRIGDG*RQSEHKIFHLA--HYDGKIQR 526
           H C  +P+ I  G RQ E  ++H+A   +D KI R
Sbjct: 11  HLCMRNPKLIRIGLRQVESIVYHVAKPSHDDKIPR 45


>SPAC750.03c |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 145

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 206 DHDPYTGSCSFLCWS 250
           DH+PYT S S +C S
Sbjct: 91  DHEPYTASLSHICHS 105


>SPBC1348.04 |||methyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 145

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 206 DHDPYTGSCSFLCWS 250
           DH+PYT S S +C S
Sbjct: 91  DHEPYTASLSHICHS 105


>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -2

Query: 588 LPFNCYLFPWRILRSCIPSHYRWIFP 511
           LP + + F W    +C P H  WI P
Sbjct: 426 LPISMFWFAW----TCYPHHIHWIVP 447


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
 Frame = -1

Query: 622 NSALVLFSPTTTT-FQLLPVSMENSTI--LHTVALSLDLPVVVSQVKYLMFTLPLTIPNS 452
           N  L+ F  T T    LLP++     I  ++TV LSL +  V S V+ L+F +   +   
Sbjct: 290 NLILISFLSTKTDKIVLLPINALKDLIQRVYTVQLSLPVKSVESSVQALLFMVLPHLHTL 349

Query: 451 LRRITTRM 428
           +  +T ++
Sbjct: 350 VNELTLKL 357


>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
 Frame = +2

Query: 107 HFGXRQGHPSQYY----RSHGHHPGPNRRRICDQSRRDHDP 217
           H+       S YY    R HG  P P RR +    RR  DP
Sbjct: 147 HYYHAGSESSAYYDSRSRLHGIQPPPKRRTLSPPPRRLADP 187


>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 756

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 639 PESMVPTVRWYCSHQL 592
           PES++   RWYC HQL
Sbjct: 233 PESVI---RWYCRHQL 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,399,798
Number of Sequences: 5004
Number of extensions: 77547
Number of successful extensions: 229
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)