Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n06r
         (748 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0648 - 19694538-19696569,19697151-19697998                       30   2.2  
02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704     30   2.2  
08_02_0200 - 14179389-14180488,14180575-14180736,14180983-141813...    29   3.0  
01_02_0116 - 11252220-11253313,11253398-11253559,11253977-112543...    29   3.0  
06_01_0580 + 4148969-4149101,4149394-4149546,4149682-4150095,415...    29   3.9  
02_05_0286 - 27506925-27507278,27508439-27508812,27509041-275092...    29   3.9  
02_05_0004 - 24880826-24882033,24882106-24882276,24882360-24883203     29   5.2  

>08_02_0648 - 19694538-19696569,19697151-19697998
          Length = 959

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
 Frame = +3

Query: 159  TIPDQ-TGAEFVISHDAIMILILVPAVFFVGHN--EFELVEVAVRCTATLNGSSPSEQIN 329
            T+P++  G++F I H    + + +  ++  G    E E+ EVA+R  A L+ + PS ++ 
Sbjct: 876  TVPERGCGSDFSI-HQLTSLKLFLVDIYCAGATAREVEVAEVAIRNHANLHPNHPSLEVR 934

Query: 330  KNTLGYYDTLLDN 368
            K    +  T  DN
Sbjct: 935  KFLKEHMATNEDN 947


>02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704
          Length = 748

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 17/37 (45%), Positives = 18/37 (48%)
 Frame = -2

Query: 441 LRQGCEHRTSNTCHPLRPKYPAGCYYPTRCRNTPGYF 331
           L  GC+    N C   R KYP  C  P  C NTPG F
Sbjct: 293 LLDGCQD--INECEDSRFKYP--CSVPGTCINTPGGF 325


>08_02_0200 -
           14179389-14180488,14180575-14180736,14180983-14181383,
           14182078-14182272,14182980-14183094,14183180-14183428,
           14184032-14184093,14184335-14184435,14184701-14184815,
           14185211-14185302,14187619-14187777
          Length = 916

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 578 LKGSGSW*EQYQRTVGTIDSGWV 646
           +KG   W  +YQR  GTID  W+
Sbjct: 701 VKGLDEWPNEYQRQYGTIDLYWI 723


>01_02_0116 -
           11252220-11253313,11253398-11253559,11253977-11254306,
           11254328-11254377,11255195-11255389,11255532-11255625,
           11255713-11255961,11256831-11256892,11257434-11257534,
           11257766-11257880,11258384-11258475,11259197-11259333,
           11259721-11259760
          Length = 906

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 578 LKGSGSW*EQYQRTVGTIDSGWV 646
           +KG   W  +YQR  GTID  W+
Sbjct: 693 VKGLDEWPNEYQRQYGTIDLYWI 715


>06_01_0580 +
           4148969-4149101,4149394-4149546,4149682-4150095,
           4150218-4150294,4151479-4152699,4153057-4153128
          Length = 689

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +1

Query: 238 SLLVTMSSSLWRLPSDALPP*TVVPHPSRSTKIPWGITTP 357
           SL  T+SS+L R+PS +LPP  ++        +P  I  P
Sbjct: 394 SLTNTLSSTLQRVPSSSLPPQELLECKQAKVSMPPSIRIP 433


>02_05_0286 -
           27506925-27507278,27508439-27508812,27509041-27509218,
           27510878-27511105,27511215-27511316,27511415-27512131,
           27512270-27512387,27512500-27512744,27512854-27513054,
           27513920-27514324
          Length = 973

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -3

Query: 737 LAAVCSCTASNLGRPVSIGEHPSLVQIEVFLPILNQWFQQCAG 609
           L  VC+     LG+P+S+   P L+Q  + LP+ N   +   G
Sbjct: 387 LNRVCALATKFLGKPISLLSPPPLLQPHLSLPMPNSSLELAIG 429


>02_05_0004 - 24880826-24882033,24882106-24882276,24882360-24883203
          Length = 740

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
 Frame = -2

Query: 441 LRQGCEHRTSNTCHPLRPKYPAGCYYPTRCRNTPGYF---C*SARMGN 307
           L  GC+    N C   R +YP  C  P  C NTPG F   C    +GN
Sbjct: 276 LLDGCQD--INECDESRFRYP--CSVPGTCVNTPGGFTCTCPDKTIGN 319


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,610,414
Number of Sequences: 37544
Number of extensions: 574198
Number of successful extensions: 1550
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1548
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)