Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11n06r
(748 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z66498-2|CAA91291.2| 419|Caenorhabditis elegans Hypothetical pr... 31 0.66
Z19157-4|CAA79570.1| 1474|Caenorhabditis elegans Hypothetical pr... 31 0.66
Z70681-1|CAA94580.1| 307|Caenorhabditis elegans Hypothetical pr... 31 1.1
U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like p... 31 1.1
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l... 30 1.5
U80837-5|AAB37901.1| 455|Caenorhabditis elegans Hypothetical pr... 30 2.0
U41538-3|AAP31431.1| 142|Caenorhabditis elegans Hypothetical pr... 30 2.0
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 30 2.0
AF106582-7|ABD94096.1| 806|Caenorhabditis elegans Hypothetical ... 28 6.1
AF106582-6|ABD94095.1| 834|Caenorhabditis elegans Hypothetical ... 28 6.1
Z93397-3|CAB07720.2| 376|Caenorhabditis elegans Hypothetical pr... 28 8.1
AF164625-1|AAD47816.1| 944|Caenorhabditis elegans tandem-array-... 28 8.1
AF022974-6|AAC48041.1| 944|Caenorhabditis elegans Tandem array ... 28 8.1
>Z66498-2|CAA91291.2| 419|Caenorhabditis elegans Hypothetical
protein M195.2 protein.
Length = 419
Score = 31.5 bits (68), Expect = 0.66
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -2
Query: 429 CEHRTSNTCHPLRPKYPAGCYYPTRCRNTPGYFC 328
C+ +N+C L P+ GC PT CRNT C
Sbjct: 275 CQTGCANSCAQLSPQPTEGC--PTNCRNTCNEVC 306
>Z19157-4|CAA79570.1| 1474|Caenorhabditis elegans Hypothetical
protein ZC84.6 protein.
Length = 1474
Score = 31.5 bits (68), Expect = 0.66
Identities = 18/60 (30%), Positives = 25/60 (41%)
Frame = +2
Query: 56 GRRHWNCSFQKTQCLPTHFGXRQGHPSQYYRSHGHHPGPNRRRICDQSRRDHDPYTGSCS 235
G W C + C P G R PS R +H G ++ +R +DP +G CS
Sbjct: 311 GSTQWCCPTVASVCGPV--GGRPLDPSVNNRGTVYHSGVEKQGTATSTRFFYDPQSGKCS 368
>Z70681-1|CAA94580.1| 307|Caenorhabditis elegans Hypothetical
protein C30F2.1 protein.
Length = 307
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -2
Query: 405 CHPLRPKYPAGCYYPTRCRNTPG 337
C P+RPK P G P CR PG
Sbjct: 102 CEPIRPKCPPGPPGPPGCRGEPG 124
>U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like
protease protein 1 protein.
Length = 293
Score = 30.7 bits (66), Expect = 1.1
Identities = 41/187 (21%), Positives = 69/187 (36%), Gaps = 7/187 (3%)
Frame = -3
Query: 620 QCAGIVLTNYHYLSTATCFHGEFYDPAYRRIIAGSSRRSEPGEISYVHFAVNHPQFS--- 450
+C G ++ L+ A CF + +Y + G RS G V HP ++
Sbjct: 83 RCGGSLIDPNFVLTAAHCFAKDRRPTSYSVRVGG--HRSGSGSPHRVTAVSIHPWYNIGF 140
Query: 449 EENYDKDVSIVRVTHAIHFGPNXXXXXXXXXXXXXXXXXXVDLLGWGTTVQGGSASDGNL 270
+YD +I+R+ ++ + GWG+T++G S S L
Sbjct: 141 PSSYD--FAIMRIHPPVNTSTTARPICLPSLPAVENRLCV--VTGWGSTIEGSSLSAPTL 196
Query: 269 HKLELIVTNKENCRNQYKDHDRVVTDHKFCAGLVRDGGRDYDNTDLGAPAXFQN----AL 102
++ + + + C + R+ CAG G D D G P L
Sbjct: 197 REIHVPLLSTLFCSSLPNYIGRIHLPSMLCAG-YSYGKIDSCQGDSGGPLMCARDGHWEL 255
Query: 101 VGIVSFG 81
G+VS+G
Sbjct: 256 TGVVSWG 262
>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
lipoprotein receptorrelated protein 2 protein.
Length = 2192
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = -2
Query: 429 CEHRTS--NT-CHPLRPKYPAGCYYPTRCRNTPGY 334
CE + NT C P+ K P C+ RC +TPGY
Sbjct: 1863 CEQNAAAHNTDCSPICQKQPNWCHNGGRCLDTPGY 1897
>U80837-5|AAB37901.1| 455|Caenorhabditis elegans Hypothetical
protein F07E5.1 protein.
Length = 455
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = -1
Query: 652 YSYPS*INGSNSALVLFSPTTTTFQLL 572
YSYPS I +S +V+ + TTTTF LL
Sbjct: 75 YSYPSPIVLEHSFVVMTTTTTTTFSLL 101
>U41538-3|AAP31431.1| 142|Caenorhabditis elegans Hypothetical
protein R04E5.8b protein.
Length = 142
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +2
Query: 107 HFGXRQGHPSQYYRSHGHHPGPNRRRICDQSR-RDHD 214
H + H + + GHH GP R D++R R+HD
Sbjct: 57 HIAPARAHNRGQHHNRGHHHGPPRNHNQDRNRHRNHD 93
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical protein
R04E5.8a protein.
Length = 997
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +2
Query: 107 HFGXRQGHPSQYYRSHGHHPGPNRRRICDQSR-RDHD 214
H + H + + GHH GP R D++R R+HD
Sbjct: 901 HIAPARAHNRGQHHNRGHHHGPPRNHNQDRNRHRNHD 937
>AF106582-7|ABD94096.1| 806|Caenorhabditis elegans Hypothetical
protein W05F2.4b protein.
Length = 806
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 86 KTQCLPTHFGXRQGHPSQYYRSHGHHPGPNRRR 184
K + PT FG Q H +Q + + + PNR R
Sbjct: 390 KRRSFPTSFGRPQAHQAQQHHAPSDYEKPNRFR 422
>AF106582-6|ABD94095.1| 834|Caenorhabditis elegans Hypothetical
protein W05F2.4a protein.
Length = 834
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 86 KTQCLPTHFGXRQGHPSQYYRSHGHHPGPNRRR 184
K + PT FG Q H +Q + + + PNR R
Sbjct: 418 KRRSFPTSFGRPQAHQAQQHHAPSDYEKPNRFR 450
>Z93397-3|CAB07720.2| 376|Caenorhabditis elegans Hypothetical
protein ZC482.6 protein.
Length = 376
Score = 27.9 bits (59), Expect = 8.1
Identities = 19/71 (26%), Positives = 30/71 (42%)
Frame = -3
Query: 632 QWFQQCAGIVLTNYHYLSTATCFHGEFYDPAYRRIIAGSSRRSEPGEISYVHFAVNHPQF 453
++F+Q VLT + S A CF F YR + R P + + +V HP
Sbjct: 307 RFFEQAQSFVLTFQIFNSVAHCFICFFLSSQYRETVKTMIRIKTPPTVMVLESSV-HPTT 365
Query: 452 SEENYDKDVSI 420
E + ++ I
Sbjct: 366 RETSKTSNLVI 376
>AF164625-1|AAD47816.1| 944|Caenorhabditis elegans
tandem-array-modifier protein protein.
Length = 944
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +2
Query: 101 PTHFGXRQGHPSQYYRSHGHHPGPNRRRICDQSRRDH 211
P H +QG P Y HHP ++ DQ +R H
Sbjct: 463 PMHHQMQQGPPRMMYMHQQHHP---MHQVEDQMQRQH 496
>AF022974-6|AAC48041.1| 944|Caenorhabditis elegans Tandem array
expression modifierprotein 1 protein.
Length = 944
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +2
Query: 101 PTHFGXRQGHPSQYYRSHGHHPGPNRRRICDQSRRDH 211
P H +QG P Y HHP ++ DQ +R H
Sbjct: 463 PMHHQMQQGPPRMMYMHQQHHP---MHQVEDQMQRQH 496
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,162,002
Number of Sequences: 27780
Number of extensions: 460182
Number of successful extensions: 1258
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1258
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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