Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11n06r
(748 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g18640.2 68414.m02324 3-phosphoserine phosphatase (PSP) nearl... 32 0.35
At1g18640.1 68414.m02323 3-phosphoserine phosphatase (PSP) nearl... 32 0.35
At1g01150.1 68414.m00024 expressed protein ; expression supporte... 31 0.61
At1g30450.3 68414.m03722 cation-chloride cotransporter, putative... 30 1.9
At1g30450.2 68414.m03721 cation-chloride cotransporter, putative... 30 1.9
At1g30450.1 68414.m03720 cation-chloride cotransporter, putative... 30 1.9
At4g11530.1 68417.m01850 protein kinase family protein contains ... 28 7.6
At3g19860.1 68416.m02515 basic helix-loop-helix (bHLH) family pr... 28 7.6
At1g53190.1 68414.m06028 zinc finger (C3HC4-type RING finger) fa... 28 7.6
>At1g18640.2 68414.m02324 3-phosphoserine phosphatase (PSP) nearly
identical to 3-phosphoserine phosphatase GI:3759177 from
[Arabidopsis thaliana]
Length = 295
Score = 32.3 bits (70), Expect = 0.35
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = +3
Query: 333 NTLGYYDTLLDNSTLLDIWAEVDGMCYSYDAHILV 437
+TLG+ ++ + +LD+W V+ +C+ D+ + V
Sbjct: 62 STLGHEGNIVPSKEILDLWRSVEAVCFDVDSTVCV 96
>At1g18640.1 68414.m02323 3-phosphoserine phosphatase (PSP) nearly
identical to 3-phosphoserine phosphatase GI:3759177 from
[Arabidopsis thaliana]
Length = 295
Score = 32.3 bits (70), Expect = 0.35
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = +3
Query: 333 NTLGYYDTLLDNSTLLDIWAEVDGMCYSYDAHILV 437
+TLG+ ++ + +LD+W V+ +C+ D+ + V
Sbjct: 62 STLGHEGNIVPSKEILDLWRSVEAVCFDVDSTVCV 96
>At1g01150.1 68414.m00024 expressed protein ; expression supported
by MPSS
Length = 345
Score = 31.5 bits (68), Expect = 0.61
Identities = 24/106 (22%), Positives = 50/106 (47%)
Frame = +3
Query: 234 VFFVGHNEFELVEVAVRCTATLNGSSPSEQINKNTLGYYDTLLDNSTLLDIWAEVDGMCY 413
V + + E L E + + T+N + P ++I + G + T ++S L D W ++ +
Sbjct: 235 VLWTVNEEKMLREGVEKFSDTINKNMPWKKILEMGKGIFHTTRNSSDLKDKWRNMNYLDL 294
Query: 414 SYDAHILVVILLRELGMVNGKVNIRYFTWLTTTGRSSDNATVCRIV 551
+ I ++I++ E+G NG+ R + R+ +C +V
Sbjct: 295 -VEVEIDIIIVVAEIGDQNGEGKKRRSDEEDESNRNHPKIRICGMV 339
>At1g30450.3 68414.m03722 cation-chloride cotransporter, putative
similar to cation-chloride co-transporter GB:AAC49874
GI:2582381 from [Nicotiana tabacum], Cation-Chloride
Cotransporter (CCC) Family Member, PMID:11500563
Length = 975
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 578 LKGSGSW*EQYQRTVGTIDSGWV 646
+KG W +YQR GTID W+
Sbjct: 767 IKGLDEWPNEYQRQYGTIDLYWI 789
>At1g30450.2 68414.m03721 cation-chloride cotransporter, putative
similar to cation-chloride co-transporter GB:AAC49874
GI:2582381 from [Nicotiana tabacum], Cation-Chloride
Cotransporter (CCC) Family Member, PMID:11500563
Length = 975
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 578 LKGSGSW*EQYQRTVGTIDSGWV 646
+KG W +YQR GTID W+
Sbjct: 767 IKGLDEWPNEYQRQYGTIDLYWI 789
>At1g30450.1 68414.m03720 cation-chloride cotransporter, putative
similar to cation-chloride co-transporter GB:AAC49874
GI:2582381 from [Nicotiana tabacum], Cation-Chloride
Cotransporter (CCC) Family Member, PMID:11500563
Length = 975
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 578 LKGSGSW*EQYQRTVGTIDSGWV 646
+KG W +YQR GTID W+
Sbjct: 767 IKGLDEWPNEYQRQYGTIDLYWI 789
>At4g11530.1 68417.m01850 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 931
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Frame = -3
Query: 641 ILNQWFQQCAGIVLTNYHYLSTATCFHGEF-----YDPAYRRIIA 522
+LN F L + Y+ST TCF+G F YD RRI++
Sbjct: 2 MLNTLFLPIFLFFLITFDYVSTQTCFNGYFKPNGTYDLNRRRILS 46
>At3g19860.1 68416.m02515 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 284
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 286 ALPP*TVVPHPSRSTKIPWGITTPCWIIAPCWIFGP 393
A+PP ++ HPS + +G P I APC + P
Sbjct: 134 AMPPGSIPMHPSMPSYTYFGNQNPSMIPAPCPTYMP 169
>At1g53190.1 68414.m06028 zinc finger (C3HC4-type RING finger)
family protein similar to RING-H2 finger protein RHG1a
GI:3822225 from [Arabidopsis thaliana]; contains Pfam
profile PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 494
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +2
Query: 47 YYGGRRHWNCSFQKTQCLPTHFGX-RQGHPSQYYRSHGHHPGP 172
Y G + S + + PT F Q +P +Y SH HHP P
Sbjct: 222 YMHGSNIFAGSIESSSRNPTSFMYPSQLNPRDHYYSHHHHPAP 264
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,165,870
Number of Sequences: 28952
Number of extensions: 427845
Number of successful extensions: 1117
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1117
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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