Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n06f
         (565 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom...    28   1.1  
SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ...    27   1.9  
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    27   2.5  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    27   2.5  
SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces pomb...    26   3.3  
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   4.4  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    25   5.8  
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit...    25   7.7  

>SPAC23C11.01 |||ER membrane protein, ICE2
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +3

Query: 285 PVVVSQVKYLMFTLPLTIPNSLRRITTRM*ASYE*HMPSTSAQISSRV 428
           P ++  V YL+ T+  T+P +L  I   M A+ +   PS  A  + R+
Sbjct: 288 PNILQSVHYLISTISATLPRTLYNIVLFMVAAAKTVAPSVFATFAFRI 335


>SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +3

Query: 201 PTTTTFQLLPVSMENSTILHTVALSLDLPVVVSQVKYLMFT--LPLTIPNSL 350
           P+  T  +L      ++IL T+  SL   +VVS   Y +FT  LP T   S+
Sbjct: 89  PSKKTLVVLGAGWGATSILRTIDTSLFNVIVVSPRNYFLFTSLLPSTATGSV 140


>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 96  RLLAVQLQTAASTATAKVRTETIVPIESN 10
           R L +  +  A +A+ K+ TE I+P ESN
Sbjct: 605 RQLHIDFENPAVSASEKLSTEEIIPQESN 633


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = -2

Query: 522 PSDALPP*TVVPHPSRSTKIPWGITTPCWIIAPCWI 415
           PSDA    T VP  + S   PW  TTP     P W+
Sbjct: 21  PSDAQSSPTFVPSANPSLTTPWLQTTPS-ANRPTWL 55


>SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 240

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -3

Query: 371 HPCRNSPQRIGDG*RQSEHKIFHLA--HYDGKIQR 273
           H C  +P+ I  G RQ E  ++H+A   +D KI R
Sbjct: 11  HLCMRNPKLIRIGLRQVESIVYHVAKPSHDDKIPR 45


>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +1

Query: 211 LPFNCYLFPWRILRSCIPSHYRWIFP 288
           LP + + F W    +C P H  WI P
Sbjct: 426 LPISMFWFAW----TCYPHHIHWIVP 447


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
 Frame = +3

Query: 177 NSALVLFSPTTTT-FQLLPVSMENSTI--LHTVALSLDLPVVVSQVKYLMFTLPLTIPNS 347
           N  L+ F  T T    LLP++     I  ++TV LSL +  V S V+ L+F +   +   
Sbjct: 290 NLILISFLSTKTDKIVLLPINALKDLIQRVYTVQLSLPVKSVESSVQALLFMVLPHLHTL 349

Query: 348 LRRITTRM 371
           +  +T ++
Sbjct: 350 VNELTLKL 357


>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
           factor complex subunit Rna14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 733

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 1   EISIRLDRNNGFRSHLSRSR 60
           E+S+RL+  NGF  H+  +R
Sbjct: 609 ELSVRLNGGNGFPGHVHNNR 628


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,484,375
Number of Sequences: 5004
Number of extensions: 54292
Number of successful extensions: 147
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)