Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11n06f
(565 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22064| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.040
SB_56478| Best HMM Match : Trypsin (HMM E-Value=0) 33 0.12
SB_50354| Best HMM Match : Trypsin (HMM E-Value=0.0028) 33 0.21
SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.28
SB_4778| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.65
SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.86
SB_59555| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_43527| Best HMM Match : Trypsin (HMM E-Value=0) 30 1.5
SB_10167| Best HMM Match : Trypsin (HMM E-Value=0) 29 3.5
SB_48258| Best HMM Match : Kelch_1 (HMM E-Value=0) 28 6.1
SB_42238| Best HMM Match : Trypsin (HMM E-Value=0) 27 8.0
SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.0
>SB_22064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 398
Score = 35.1 bits (77), Expect = 0.040
Identities = 24/76 (31%), Positives = 34/76 (44%)
Frame = +3
Query: 123 TPAWSKLKYSYPS*INGSNSALVLFSPTTTTFQLLPVSMENSTILHTVALSLDLPVVVSQ 302
TP S S PS S SP+T+ Q++P + + L T + S +LPV Q
Sbjct: 118 TPPISSSLSSLPSERQQSQDPSRGDSPSTSVKQMVPNTQASRLCLQTTSASSNLPVTTQQ 177
Query: 303 VKYLMFTLPLTIPNSL 350
+ FT P IP +
Sbjct: 178 SFRMTFTPPSMIPKPI 193
>SB_56478| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 968
Score = 33.5 bits (73), Expect = 0.12
Identities = 14/76 (18%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Frame = +2
Query: 182 CAGIVLTNYHYLSTATCFHGEFYDPAYRRIIAGSSRRSEPGEISYVHFA---VNHPQFSE 352
C G +++ ++ A C G + P+Y +++ G R+ P H + HP ++
Sbjct: 93 CGGSLVSPTWVVTAAHCIAGSSHTPSY-KVVTGEHIRNSPEGTEQTHDVKRIITHPTYNS 151
Query: 353 ENYDKDVSIVRVTHAI 400
D++++ ++ +
Sbjct: 152 PQLSNDIALIELSSPV 167
>SB_50354| Best HMM Match : Trypsin (HMM E-Value=0.0028)
Length = 333
Score = 32.7 bits (71), Expect = 0.21
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Frame = +2
Query: 143 EVFLPILNQW--FQQCAGIVLTNYHYLSTATCFH-GEFYDPAYRRIIAGSSRRSEPGEIS 313
E F+ + W QC+G ++ H ++ A C H G+++ I+ G S S E+
Sbjct: 138 EPFVSSVKLWSDVMQCSGTLIGPCHVITAAHCIHNGKWFVSPLTAILVGVSNTSSTDELD 197
Query: 314 YVHFAV 331
Y FAV
Sbjct: 198 Y--FAV 201
>SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1864
Score = 32.3 bits (70), Expect = 0.28
Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Frame = +2
Query: 143 EVFLPILNQWFQQCAGIVLTNYHYLSTATCFHGEFYDPAYRRIIAGSS---RRSEPGEIS 313
+V L + Q+C G ++ L+ A CF F P + G S RR G+
Sbjct: 1253 QVALTLSGNPVQRCGGALIAADWVLTAAHCF-DRFSMPPEWTVQVGVSDMRRRDGKGQSL 1311
Query: 314 YVHFAVNHPQFSEENYDKDVSIVRVTHAIHF 406
+ HPQ++ +++ D++++++ F
Sbjct: 1312 SIKAIFVHPQYNSSSHEHDLAVLQLQQPAEF 1342
>SB_4778| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 867
Score = 31.1 bits (67), Expect = 0.65
Identities = 26/123 (21%), Positives = 48/123 (39%), Gaps = 5/123 (4%)
Frame = +2
Query: 158 ILNQWFQQCAGIVLTNYHYLSTATCFHGEFYDPAYRRIIAGSSRRSEPGEISYVHFAV-- 331
I N Q C G ++T ++ A C + +PA ++ G+ R+ P + ++
Sbjct: 649 IYNSGRQFCGGTLVTPEWVITAAHCVVDK--NPASIQVRLGAQDRTSPDPSVEMRISIRS 706
Query: 332 --NHPQF-SEENYDKDVSIVRVTHAIHFGPNXXXXXXXXXXXXXXXXXXXDLLGWGTTVQ 502
NHP + S + D++++R++ + GWGT
Sbjct: 707 IHNHPDYGSPKRSSNDIALLRLSRPTILTHRINLACMPNDTVHFPNGTMCYITGWGTLSS 766
Query: 503 GGS 511
GGS
Sbjct: 767 GGS 769
>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 30.7 bits (66), Expect = 0.86
Identities = 12/80 (15%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Frame = +2
Query: 173 FQQCAGIVLTNYHYLSTATCFHGEFYDPAYRRIIAGSSRRSEPGEISYVHFA--VNHPQF 346
F C G ++++ ++ A C H Y ++ +R + + + HP++
Sbjct: 129 FHTCGGSLISDRWVVTAAHCIHRNKNPGGYTVVVGAHKKRGSTSVQQSLRLSQIIEHPKY 188
Query: 347 SEENYDKDVSIVRVTHAIHF 406
++ D++++ + + F
Sbjct: 189 NDRRIVNDIALLELATPVQF 208
>SB_59555| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 898
Score = 30.3 bits (65), Expect = 1.1
Identities = 21/114 (18%), Positives = 41/114 (35%), Gaps = 2/114 (1%)
Frame = +2
Query: 182 CAGIVLTNYHYLSTATCFHGEFYDPAYRRIIAGSSRRSE-PGEISY-VHFAVNHPQFSEE 355
C G ++ ++ A C Y ++ R P + ++ + H QFS
Sbjct: 57 CGGSLIAKDWVVTAAHCVDRNPTPSGYTVVVGAHHRTGNTPVQNTFRLKQLFKHEQFSMR 116
Query: 356 NYDKDVSIVRVTHAIHFGPNXXXXXXXXXXXXXXXXXXXDLLGWGTTVQGGSAS 517
+ D++++++ + + GWG TV GGSA+
Sbjct: 117 HLKNDIALLQLHEPVKASDKVNTVCLPSSGSRAQAGARCYITGWGRTVGGGSAA 170
>SB_43527| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 366
Score = 29.9 bits (64), Expect = 1.5
Identities = 8/24 (33%), Positives = 17/24 (70%)
Frame = +2
Query: 335 HPQFSEENYDKDVSIVRVTHAIHF 406
HP +S ++YD D++++R+ + F
Sbjct: 199 HPHYSPDSYDSDIALIRLAQPVTF 222
>SB_10167| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 532
Score = 28.7 bits (61), Expect = 3.5
Identities = 25/113 (22%), Positives = 42/113 (37%)
Frame = +2
Query: 182 CAGIVLTNYHYLSTATCFHGEFYDPAYRRIIAGSSRRSEPGEISYVHFAVNHPQFSEENY 361
C G ++T L+ A C +F P+ RI S+ + E + H FS +
Sbjct: 106 CGGSLITPEWVLTAAHCVE-DFPHPSAHRIKERSAIQQE----FRLTKLFKHKDFSMSHL 160
Query: 362 DKDVSIVRVTHAIHFGPNXXXXXXXXXXXXXXXXXXXDLLGWGTTVQGGSASD 520
DV+++++ + I + GWG V GG S+
Sbjct: 161 KNDVALLKLDNPIQPSDKVNTVCLPERNSRAQVGAQCFITGWGRLVGGGQPSE 213
>SB_48258| Best HMM Match : Kelch_1 (HMM E-Value=0)
Length = 473
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 128 SLVQIEVFLPILNQWFQQCAGIVLTNYHYLSTATCFHGEFY 250
+LV +E + P N+W ++ +LT Y STA G+ Y
Sbjct: 111 NLVSMERYDPSTNEWEEEAVAPMLTARKYFSTAV-LDGKLY 150
>SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 657
Score = 27.5 bits (58), Expect = 8.0
Identities = 31/148 (20%), Positives = 54/148 (36%), Gaps = 8/148 (5%)
Frame = +2
Query: 143 EVFLPILNQWFQQCAGIVLTNYHYLSTATCF--HGEFYDPAYRRIIAGSSRRSE------ 298
E+ L N C G ++ Y L+++ CF + R+ RR E
Sbjct: 2 EIILKTPNLTTHYCGGSLIDPYWILTSSHCFWTYNNISTQFEIRLGEHDERRIEGYEEII 61
Query: 299 PGEISYVHFAVNHPQFSEENYDKDVSIVRVTHAIHFGPNXXXXXXXXXXXXXXXXXXXDL 478
G+ Y+H + D DV+++++ F +
Sbjct: 62 QGDQLYIHPGLVVGDLISPG-DYDVALIKLKRPAVFHKRVHSVCLPSVTANLTTGTKCFV 120
Query: 479 LGWGTTVQGGSASDGNLHKLELIVTNKE 562
GWG T +G S L++LE+ + +KE
Sbjct: 121 TGWGKTAEGSPYSP-VLNELEVDIVSKE 147
>SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1465
Score = 27.5 bits (58), Expect = 8.0
Identities = 8/19 (42%), Positives = 15/19 (78%)
Frame = +2
Query: 332 NHPQFSEENYDKDVSIVRV 388
+HP+FS YD D++++R+
Sbjct: 1249 SHPRFSWRTYDSDIALIRL 1267
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,156,486
Number of Sequences: 59808
Number of extensions: 439026
Number of successful extensions: 1000
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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