Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11n05r
(779 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_02_0100 - 11108275-11108535,11110333-11111619 32 0.44
09_04_0358 - 16937528-16937587,16938255-16938282,16938305-169383... 30 2.4
07_01_0431 + 3283252-3283274,3283684-3283819,3285839-3286682,328... 29 3.1
07_03_0256 - 15875066-15877025,15877292-15877911 29 5.5
04_04_1532 - 34187153-34187308,34187426-34187551,34187856-341879... 28 7.2
01_05_0346 + 21191542-21191783,21191988-21192072,21192159-211924... 28 7.2
01_01_0816 + 6360526-6360802,6360902-6361117,6361231-6361379,636... 28 7.2
05_05_0132 - 22611030-22611908,22612016-22612135,22612644-226128... 28 9.6
>01_02_0100 - 11108275-11108535,11110333-11111619
Length = 515
Score = 32.3 bits (70), Expect = 0.44
Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Frame = -3
Query: 303 PVYGA*RAQDEGLAFAS--RSGLGRPARALHEPEALADESAR-HPQTG 169
P +GA A+ E LA A+ GL R H+ EA +DESAR P+ G
Sbjct: 7 PSHGAQAAEAEALAAAADLEQGLTRHLMEYHQSEASSDESARQRPRVG 54
>09_04_0358 -
16937528-16937587,16938255-16938282,16938305-16938328,
16938466-16938504,16938834-16938877,16939050-16939097
Length = 80
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -1
Query: 140 DCYEREKVISAHPAFRYELGYAPGESVTFK 51
DC E+++ A PAF+ + + G++VT K
Sbjct: 46 DCSSNERILCALPAFQVRMRHPRGQAVTMK 75
>07_01_0431 +
3283252-3283274,3283684-3283819,3285839-3286682,
3286785-3286856,3286906-3286937,3287020-3287433
Length = 506
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +3
Query: 102 WVSRNNL-FSLVTVLGASYQLRYVQFGDGEQIHQQVLLVRVERAL 233
W SR +L F TVL + ++ DG+++++++ + RV+ L
Sbjct: 82 WCSRESLVFRFYTVLSMHHHIKRCWTSDGQRLNKELFIERVDSVL 126
>07_03_0256 - 15875066-15877025,15877292-15877911
Length = 859
Score = 28.7 bits (61), Expect = 5.5
Identities = 40/130 (30%), Positives = 64/130 (49%), Gaps = 12/130 (9%)
Frame = +3
Query: 54 EGHRFAWRVSQFVTEGWVSRNNLFSLVTVLGAS-------YQLRYVQF---GDGEQIHQQ 203
+G A RV + + VSR+N + VT++GAS ++R + F +G
Sbjct: 422 DGQVHACRVHDTILDFVVSRSNEENFVTMVGASDLTSTPTGKIRRLSFHKNSEGSVTMPT 481
Query: 204 VLLVRVERALVGPVHFARQTPVLHLGLFTLRILVEVQSLYVLDDHFDFTSSGPVVH-EQL 380
LL R+L +H A Q P L LG + LR+L ++++ L +H D S G ++ L
Sbjct: 482 YLLRSHVRSLTTFLH-AGQVPPL-LGFYGLRVL-DLENCSGLKNH-DLKSIGRLIQLRYL 537
Query: 381 CMSG-DISQI 407
+ G DIS +
Sbjct: 538 NIKGTDISDL 547
>04_04_1532 -
34187153-34187308,34187426-34187551,34187856-34187977,
34188058-34188181,34189671-34189821,34190506-34190720,
34191142-34191343,34191423-34191597,34191746-34192055,
34192141-34192356
Length = 598
Score = 28.3 bits (60), Expect = 7.2
Identities = 25/81 (30%), Positives = 37/81 (45%)
Frame = +3
Query: 213 VRVERALVGPVHFARQTPVLHLGLFTLRILVEVQSLYVLDDHFDFTSSGPVVHEQLCMSG 392
+++E A + + R +LH L T I+V S V+D F F GP M
Sbjct: 224 LKLEIAELKSMFIERAQALLHGDLHTGSIMVTPDSTQVIDPEFAF--YGP-------MGY 274
Query: 393 DISQILVFVLLLNFSQEGRCE 455
DI L ++L FSQ+G +
Sbjct: 275 DIGAFLGNLILAYFSQDGHAD 295
>01_05_0346 +
21191542-21191783,21191988-21192072,21192159-21192422,
21192518-21192820,21193695-21193799,21193916-21194020,
21194613-21194712,21195614-21195933,21196183-21196359,
21196432-21196560,21196592-21196636,21196851-21197078
Length = 700
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +3
Query: 60 HRFAWRVSQFVTEGWVSRNNLFSLVTVLGASYQLRYVQFGDGEQI 194
HR WR+SQF E +F L + G + Q RY+Q D +Q+
Sbjct: 602 HRSGWRISQFGVEVETPDFWMFKL-DIFGKAIQ-RYIQKPDKKQL 644
>01_01_0816 +
6360526-6360802,6360902-6361117,6361231-6361379,
6361474-6361750,6362228-6362457
Length = 382
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +3
Query: 387 SGDISQILVFVLLLNFSQEGRCESFAGHLVTES--TFFNSFLNLGN 518
S ++ +L+ +LLL + G+ ++GH +S +F NS+ + GN
Sbjct: 6 SNKMTLLLLLLLLLGCTHHGQANMYSGHPKIDSIFSFGNSYSDTGN 51
>05_05_0132 -
22611030-22611908,22612016-22612135,22612644-22612856,
22612968-22613288,22613421-22613504
Length = 538
Score = 27.9 bits (59), Expect = 9.6
Identities = 23/70 (32%), Positives = 28/70 (40%)
Frame = -3
Query: 240 GRPARALHEPEALADESARHPQTGHTGADN*RRGLLRERKGYFCSPSLPLRTGIRARRIC 61
G R + E AD+ R Q G G D RG R+ SPS L G +
Sbjct: 428 GERRRGAADAELHADDQVREGQGGSAGGD---RGPRHRREDGARSPSGDLTVGDQQAPFP 484
Query: 60 DLQEQAAQIP 31
L+ QA Q P
Sbjct: 485 GLRGQAEQRP 494
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,933,644
Number of Sequences: 37544
Number of extensions: 414544
Number of successful extensions: 1068
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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