Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n05r
         (779 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3989| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.4  
SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)                    29   5.6  
SB_59713| Best HMM Match : eIF-4B (HMM E-Value=4.5)                    28   7.4  
SB_44630| Best HMM Match : HECT (HMM E-Value=0)                        28   9.8  
SB_30291| Best HMM Match : rve (HMM E-Value=5.3e-16)                   28   9.8  

>SB_3989| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1283

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +3

Query: 90  VTEGWVSRNNLFSLVTVLGASYQL-RYVQFGDGEQIHQQVLLVRVERALVGP 242
           +TEG +S++    L+  L   Y+L R V + D + +HQ+ + +  E  +V P
Sbjct: 687 LTEGLISKDQYVELIDKLFEFYELQRQVDWEDKQILHQEHVPMEQEHEVVSP 738



 Score = 29.9 bits (64), Expect = 2.4
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -1

Query: 305 DQYTEREEPKMKDWRLPREVDWADQRALYTNQKHLLM 195
           DQY E  +   + + L R+VDW D++ L+  Q+H+ M
Sbjct: 695 DQYVELIDKLFEFYELQRQVDWEDKQILH--QEHVPM 729


>SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)
          Length = 2565

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 26/92 (28%), Positives = 33/92 (35%), Gaps = 1/92 (1%)
 Frame = +3

Query: 126 SLVTVLGASYQLRY-VQFGDGEQIHQQVLLVRVERALVGPVHFARQTPVLHLGLFTLRIL 302
           SL+T  G S   R  +Q G   Q  +Q    R        VH   Q      G  TLR L
Sbjct: 13  SLLTFSGTSLVARTAIQAGAALQETRQFGQRRRYSKRADIVHLPNQIATCKSGALTLRSL 72

Query: 303 VEVQSLYVLDDHFDFTSSGPVVHEQLCMSGDI 398
                ++ L +      SG +    LC   DI
Sbjct: 73  CRGADIFHLSNQIATCKSGALTLRSLCRGADI 104



 Score = 27.9 bits (59), Expect = 9.8
 Identities = 15/52 (28%), Positives = 20/52 (38%)
 Frame = +3

Query: 243 VHFARQTPVLHLGLFTLRILVEVQSLYVLDDHFDFTSSGPVVHEQLCMSGDI 398
           VH + Q      G  TLR L     ++ L +      SG +    LC   DI
Sbjct: 105 VHLSNQIAACKSGALTLRSLCRGADIFHLSNQIATCKSGALTLRSLCRGADI 156


>SB_59713| Best HMM Match : eIF-4B (HMM E-Value=4.5)
          Length = 794

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 321 YVLDDHFDFTSSGPVVHEQLCMSGDISQILV 413
           YV+  H   T +G  V E+LCM  +++ ++V
Sbjct: 753 YVMTKHIRDTPAGMSVTERLCMQDEVNHVVV 783


>SB_44630| Best HMM Match : HECT (HMM E-Value=0)
          Length = 1003

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +3

Query: 606 LTQEFLRIHSFQEYKVRVRGPLQHNSLASIEQVCQSINILTVPG 737
           L+ + +++   Q+  + +  PL H S   + ++CQ +N L  PG
Sbjct: 456 LSSQVVKVDEVQQLVILMENPLLHKSQDLLRKLCQVLNALP-PG 498


>SB_30291| Best HMM Match : rve (HMM E-Value=5.3e-16)
          Length = 550

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -1

Query: 599 RSTYYELRENTIEELMRPHLVIYLDLPVSKVQEAIKKRALS 477
           + +YY+   NT++  +   +  YLD  V++ Q A K+R LS
Sbjct: 480 QKSYYDRTSNTVQNPITRFVYDYLDAEVAEAQ-ATKQRVLS 519


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,206,056
Number of Sequences: 59808
Number of extensions: 477297
Number of successful extensions: 1928
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1928
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)