Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11n05r
(779 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U21320-3|AAA62532.1| 436|Caenorhabditis elegans Hypothetical pr... 141 4e-34
Z73897-2|CAA98063.2| 140|Caenorhabditis elegans Hypothetical pr... 29 3.7
L15322-1|AAA28146.1| 142|Caenorhabditis elegans spe-17 protein. 29 3.7
Z93378-1|CAB07582.1| 303|Caenorhabditis elegans Hypothetical pr... 29 4.9
U58760-2|AAK31460.1| 130|Caenorhabditis elegans Ribosomal prote... 28 8.6
U23175-3|AAC46712.2| 959|Caenorhabditis elegans Anion/bicarbona... 28 8.6
U23175-2|AAM98009.1| 797|Caenorhabditis elegans Anion/bicarbona... 28 8.6
U23175-1|AAZ91355.1| 826|Caenorhabditis elegans Anion/bicarbona... 28 8.6
AY887905-1|AAX34417.1| 959|Caenorhabditis elegans anion transpo... 28 8.6
>U21320-3|AAA62532.1| 436|Caenorhabditis elegans Hypothetical
protein K04G7.4a protein.
Length = 436
Score = 141 bits (342), Expect = 4e-34
Identities = 79/214 (36%), Positives = 120/214 (56%), Gaps = 3/214 (1%)
Frame = -1
Query: 770 LAANFPIMMYVARYSQYIDALAHLFNTGQGIVLERSPYSDFVFLEAMYSQKFLSKAVRST 591
L+A ++ R+ QY++ALAH+ NTGQG+VLER+P+SDFVF AM + ++
Sbjct: 145 LSAAMQDRIFNCRFDQYLNALAHILNTGQGVVLERTPHSDFVFANAMRDKNYIGHEYFKH 204
Query: 590 YYELRENTIEEL-MRPHLVIYLDLPVSKVQEAIKKRALSHEVTSKALTPAFLTEIEKQYK 414
YY +R+N + +L PHLV+YL+ P +K E IK+R + E+ + + +L IE+ YK
Sbjct: 205 YYFVRKNALPQLHFWPHLVVYLNTPTNKCLENIKRRGNTDEIAT--VDERYLKTIEESYK 262
Query: 413 NKYLRDIATHAELLVYDWTXXXXXXXXXEDIERLNFDQYTEREEPKMKDWR-LPREVDWA 237
+ LR+ H+++L YDWT EDIERL+ D + M++W + V W
Sbjct: 263 DS-LREYRNHSKILAYDWTKPGDTDAVVEDIERLDLDFFEWHSGDVMEEWNTIVDSVGWN 321
Query: 236 DQRALYTNQKHLLMNLL-AIPKLDIPELITSAED 138
R TN+ M IPK ++ EL T+ D
Sbjct: 322 GWRQYVTNKYDARMLAFDGIPKHEVGELYTNPRD 355
>Z73897-2|CAA98063.2| 140|Caenorhabditis elegans Hypothetical
protein ZK617.3 protein.
Length = 140
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -1
Query: 305 DQYTEREEPKMKDWRLPREVDWADQRALYTNQKHLLMNLL 186
+Q T R K++ WR R V W+ R LY ++ + +L+
Sbjct: 88 EQKTFRVARKLRTWRPRRSVTWSFLRRLYNGREDMKEDLI 127
>L15322-1|AAA28146.1| 142|Caenorhabditis elegans spe-17 protein.
Length = 142
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -1
Query: 305 DQYTEREEPKMKDWRLPREVDWADQRALYTNQKHLLMNLL 186
+Q T R K++ WR R V W+ R LY ++ + +L+
Sbjct: 90 EQKTFRVARKLRTWRPRRSVTWSFLRRLYNGREDMKEDLI 129
>Z93378-1|CAB07582.1| 303|Caenorhabditis elegans Hypothetical
protein F19H8.2 protein.
Length = 303
Score = 28.7 bits (61), Expect = 4.9
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Frame = +3
Query: 267 VLHLGLFTLRILVEVQSLYVLDDHFDFTSSGPVVHEQLCMSGDISQI-LVFVLLLNFSQ- 440
VL + L + +L +LD ++ F S + LC SQ V LLL+ S
Sbjct: 7 VLFISLTFVGVLETADICDILDANYCFYFSDSACYINLCQCEACSQPDKVQALLLDDSSN 66
Query: 441 -----EGR-CESFAGHLVTESTFFNSFLNLGN 518
+GR C S+ GHL + T N +GN
Sbjct: 67 STHESQGRLCPSWCGHLKSNETIVNILGAVGN 98
>U58760-2|AAK31460.1| 130|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 22, isoform a protein.
Length = 130
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Frame = +3
Query: 66 FAWRVSQFVTEGWVSRNNL---FSLVTVLGASYQLRYVQFGDGE 188
F+ R +++T+ ++ RN+L +V V +Y++RY DGE
Sbjct: 80 FSKRYLKYLTKKYLKRNSLRDWLRVVAVNKNTYEVRYFHINDGE 123
>U23175-3|AAC46712.2| 959|Caenorhabditis elegans Anion/bicarbonate
transporter familyprotein 3, isoform a protein.
Length = 959
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = +3
Query: 183 GEQIHQQVLLVRVERALVGPVHFARQTPVLHLGLFTLRILVEV 311
G ++ +++LL+ E+ P H+ R+ P + LFT L+++
Sbjct: 868 GNEMFERLLLLITEQQAYPPTHYIRKVPQRKVHLFTACQLLQL 910
>U23175-2|AAM98009.1| 797|Caenorhabditis elegans Anion/bicarbonate
transporter familyprotein 3, isoform b protein.
Length = 797
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = +3
Query: 183 GEQIHQQVLLVRVERALVGPVHFARQTPVLHLGLFTLRILVEV 311
G ++ +++LL+ E+ P H+ R+ P + LFT L+++
Sbjct: 706 GNEMFERLLLLITEQQAYPPTHYIRKVPQRKVHLFTACQLLQL 748
>U23175-1|AAZ91355.1| 826|Caenorhabditis elegans Anion/bicarbonate
transporter familyprotein 3, isoform c protein.
Length = 826
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = +3
Query: 183 GEQIHQQVLLVRVERALVGPVHFARQTPVLHLGLFTLRILVEV 311
G ++ +++LL+ E+ P H+ R+ P + LFT L+++
Sbjct: 735 GNEMFERLLLLITEQQAYPPTHYIRKVPQRKVHLFTACQLLQL 777
>AY887905-1|AAX34417.1| 959|Caenorhabditis elegans anion
transporter ABTS-3 protein.
Length = 959
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = +3
Query: 183 GEQIHQQVLLVRVERALVGPVHFARQTPVLHLGLFTLRILVEV 311
G ++ +++LL+ E+ P H+ R+ P + LFT L+++
Sbjct: 868 GNEMFERLLLLITEQQAYPPTHYIRKVPQRKVHLFTACQLLQL 910
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,708,649
Number of Sequences: 27780
Number of extensions: 355291
Number of successful extensions: 935
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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