Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n05r
         (779 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g57510.1 68416.m06402 endo-polygalacturonase (ADPG1) identica...    31   0.65 
At2g31740.1 68415.m03876 expressed protein                             29   4.6  
At2g21870.2 68415.m02599 expressed protein                             29   4.6  
At2g21870.1 68415.m02598 expressed protein                             29   4.6  
At1g18220.1 68414.m02270 hypothetical protein                          29   4.6  
At5g23930.1 68418.m02810 mitochondrial transcription termination...    28   8.0  
At3g49200.1 68416.m05377 hypothetical protein                          28   8.0  

>At3g57510.1 68416.m06402 endo-polygalacturonase (ADPG1) identical
           to endo-polygalacturonase [Arabidopsis thaliana]
           GI:2597824
          Length = 431

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = -2

Query: 706 HTCSILAKELCWRGPLTLTLYSWKLCILRNS*VRQSGQLTMSCEK 572
           ++C I   + C + P  LTLY+ K   ++N  V+ + Q+ +S EK
Sbjct: 178 NSCKIDKSKPCTKAPTALTLYNLKNLNVKNLRVKNAQQIQISIEK 222


>At2g31740.1 68415.m03876 expressed protein
          Length = 760

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -1

Query: 524 LPVSKVQEAIKKRALSHEVTSKALTPAFLTEIEKQYKNKYLRDIATHAEL 375
           +P     + IKKR   HEVTS       + ++  +     L D++T ++L
Sbjct: 393 IPYMMASDGIKKRDTVHEVTSPMTGKVVVEDVVYESAPSNLEDLSTSSDL 442


>At2g21870.2 68415.m02599 expressed protein
          Length = 220

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = -1

Query: 512 KVQEAIKKRALSHEVTSKALTPAFLTEIEKQYKNKYLRDIATHAELLVYDW 360
           K+QE   +R L+ E+ ++A+    L ++EK  K   LR      +LLV ++
Sbjct: 123 KLQEIRTRRGLTDELGAEAMMFEALEKVEKDIKKPLLRSDKKGMDLLVAEF 173


>At2g21870.1 68415.m02598 expressed protein
          Length = 240

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = -1

Query: 512 KVQEAIKKRALSHEVTSKALTPAFLTEIEKQYKNKYLRDIATHAELLVYDW 360
           K+QE   +R L+ E+ ++A+    L ++EK  K   LR      +LLV ++
Sbjct: 123 KLQEIRTRRGLTDELGAEAMMFEALEKVEKDIKKPLLRSDKKGMDLLVAEF 173


>At1g18220.1 68414.m02270 hypothetical protein
          Length = 45

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 171 QFGDGEQIHQQVLLVRVERALVGP-VHFARQTPVLHLGL 284
           QFG G  +HQ + ++ +E   + P V   ++ P LH+G+
Sbjct: 7   QFGKGHVLHQMLRILELEVIQIMPKVMTNKKKPTLHIGV 45


>At5g23930.1 68418.m02810 mitochondrial transcription termination
           factor-related / mTERF-related contains Pfam profile
           PF02536: mTERF
          Length = 457

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = -1

Query: 590 YYELRENTIEELMRPHLVIYLDLPVSKVQEAIKKRALSHEVTSKALTPAFLT 435
           +YEL + TIEE +  +  I L L V++V    KK   S + + K +   F T
Sbjct: 247 FYELSDKTIEEKVNAY--IRLGLSVNEVWAVFKKWPFSLKYSEKNIIQKFET 296


>At3g49200.1 68416.m05377 hypothetical protein
          Length = 507

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/28 (53%), Positives = 17/28 (60%)
 Frame = +1

Query: 157 SSGMSSLGMASRFISKCFWFV*SARWSA 240
           SSG SSL  +SR  S+ FW V    WSA
Sbjct: 196 SSGSSSLKTSSRCYSRFFWLV-MVLWSA 222


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,773,448
Number of Sequences: 28952
Number of extensions: 333367
Number of successful extensions: 892
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)