Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11n05f
(604 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0840 + 28570642-28570809,28570919-28571025,28571137-285712... 31 0.70
06_03_1497 + 30585074-30586327 30 1.6
07_01_0564 - 4183441-4183530,4183683-4183752,4183972-4184063,418... 29 2.1
01_06_1273 + 35896320-35896400,35896548-35896736,35897817-358979... 29 2.1
08_01_0083 - 604175-605776 29 2.8
04_04_1397 - 33230416-33230742,33230852-33231007,33231130-332315... 28 5.0
10_01_0232 + 2456449-2456652,2456814-2456897,2459113-2459201,245... 28 6.5
06_03_0608 + 22705321-22705652,22705809-22706178,22706264-227066... 28 6.5
08_01_0089 - 646310-646397,646566-647932 27 8.7
>04_04_0840 +
28570642-28570809,28570919-28571025,28571137-28571238,
28571786-28571981,28572691-28572819,28572869-28572895,
28572896-28573090,28573182-28573292
Length = 344
Score = 31.1 bits (67), Expect = 0.70
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +2
Query: 296 DDNSKVIIVEGPVAAGKTAFAASLADDLGMKHFPEANMDLHYIRPNGVDL 445
D N +I+ GP GKT SLA +L + EA ++L+ G+D+
Sbjct: 47 DGNMPNLILSGPPGTGKTTSILSLAHELLGPSYREAVLELNASDDRGLDV 96
>06_03_1497 + 30585074-30586327
Length = 417
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 305 SKVIIVEGPVAAGKTAFAASLADDL 379
+KVI++ GP AGKT A LA L
Sbjct: 25 NKVIVISGPTGAGKTRLALDLAKRL 49
>07_01_0564 -
4183441-4183530,4183683-4183752,4183972-4184063,
4184141-4184240,4184372-4184478,4184703-4184768,
4184879-4185013,4185653-4185808,4186113-4186262,
4186426-4186557,4187604-4187693
Length = 395
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 308 KVIIVEGPVAAGKTAFAASLADDLGMK 388
+ +++ GP A GKTA A ++ +LG K
Sbjct: 4 RALLLAGPPATGKTALALGISQELGSK 30
>01_06_1273 +
35896320-35896400,35896548-35896736,35897817-35897948,
35898093-35898242,35898564-35898719,35899462-35899596,
35899706-35899771,35900016-35900122,35900258-35900357,
35900436-35900527,35901026-35901095,35901229-35901318
Length = 455
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 308 KVIIVEGPVAAGKTAFAASLADDLGMK 388
+ +++ GP A GKTA A ++ +LG K
Sbjct: 64 RALLLAGPPATGKTALALGISQELGSK 90
>08_01_0083 - 604175-605776
Length = 533
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +2
Query: 230 FDYVNKDYTWLRSLIDRTTHRFDDNSKVIIVEGPVAAGKTAFAASLA 370
FD + D+ W R + R+ + KV + EGP AG + LA
Sbjct: 410 FDVLGNDFGWGRPVSVRSGGANKFDGKVTVYEGPDGAGSMSLEVCLA 456
>04_04_1397 -
33230416-33230742,33230852-33231007,33231130-33231543,
33234177-33234307,33235076-33235202,33235709-33236209,
33237624-33237935,33238690-33238719
Length = 665
Score = 28.3 bits (60), Expect = 5.0
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = -2
Query: 531 AAKRWLGF*LKLTWSKVLVSSGTWSSKDLKSTPFGR-I*CKSMLASGKCFIPKSSAREAA 355
A KR +K W+K + G W+ + K+T GR +++LAS + + + S R+ A
Sbjct: 60 AGKRVTKKQVKWRWAKSRKNFGMWTWLESKATGLGRDTVSQAILASDEWWEIQESERKGA 119
Query: 354 KA 349
KA
Sbjct: 120 KA 121
>10_01_0232 +
2456449-2456652,2456814-2456897,2459113-2459201,
2459245-2459452,2459764-2459883,2460004-2460087,
2460171-2460242,2460342-2460455,2460852-2460952,
2461024-2461117,2461265-2461432,2461539-2461616,
2461908-2461973,2462052-2462108,2462353-2462572,
2462867-2463003,2465379-2465450,2465530-2465577,
2465681-2465806,2465982-2466047,2466508-2466620,
2467348-2467432,2467885-2467980,2468067-2468114,
2468190-2468258,2468393-2468581
Length = 935
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +2
Query: 413 LHYIRPNGVDLRSFDDQVP--EDTRTFDHVNFNQNPNHRLAA 532
+HY P+G FDD VP +D FD+ N + N +AA
Sbjct: 243 VHYSPPDGFGFEIFDDFVPVQDDMLLFDY-NLKERVNDFVAA 283
>06_03_0608 +
22705321-22705652,22705809-22706178,22706264-22706656,
22707183-22707204,22707257-22707928,22708019-22708494
Length = 754
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 419 YIRPNGVDLRSFDDQVPEDTRTFDH 493
YIRP + RS ++ +D RTF H
Sbjct: 493 YIRPKDPNFRSVHKRIRDDRRTFPH 517
>08_01_0089 - 646310-646397,646566-647932
Length = 484
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = +2
Query: 230 FDYVNKDYTWLRSLIDRTTHRFDDNSKVIIVEGPVAAGKTAFAASLA 370
FD D+ W R R+ + KV + EGP AG + LA
Sbjct: 390 FDVFGNDFGWGRPASVRSGGANKFDGKVTVYEGPGGAGSMSLEVCLA 436
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,644,991
Number of Sequences: 37544
Number of extensions: 310435
Number of successful extensions: 792
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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