Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n05f
         (604 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   2.3  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   3.0  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   4.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.0  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
 Frame = +2

Query: 263 RSLIDRTTHRFDDNSKVIIVEGPVAAGKTAFA---ASLADDLGMKHFPEANMDLHY-IRP 430
           R++ID +  + +  +  I+VEG V+ G++        + DD+G K   +A +DL      
Sbjct: 271 RNIIDNSAQKTESKTNNIVVEG-VSFGQSVGLKDDLDIDDDVGEKK-RQAFLDLLIEAGQ 328

Query: 431 NGVDLRSFDDQVPEDTRTFD 490
           NGV L   + +   DT  F+
Sbjct: 329 NGVLLTDKEVKEQVDTIMFE 348


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -2

Query: 162 CTNVHAAIFVP*VGLITLITAVLTRVAIVANVPYE 58
           C     A++   VGLIT++      V     +PYE
Sbjct: 444 CIGARFAVYQTKVGLITILRNHKVEVCEKTIIPYE 478


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 126 VGLITLITAVLTRVAIVANVPYEL*NSNQYITTNRS*KICDI 1
           VGL  L+ A+L +VAI+      +   N+   + RS    D+
Sbjct: 81  VGLTFLLGAILVQVAIICEGVMNIQKDNKSYLSLRSLLSADV 122


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = -1

Query: 343  TSSYRPFHDYHFAVI---IKPVGRAVD*AAQPSVV 248
            T  YRP +++H+ ++   +K   R V    QPS V
Sbjct: 1533 TIQYRPINEFHWTLVSNSVKMQRRFVVTNLQPSSV 1567


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = -1

Query: 343  TSSYRPFHDYHFAVI---IKPVGRAVD*AAQPSVV 248
            T  YRP +++H+ ++   +K   R V    QPS V
Sbjct: 1529 TIQYRPINEFHWTLVSNSVKMQRRFVVTNLQPSSV 1563


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,562
Number of Sequences: 438
Number of extensions: 3383
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)