Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11n05f
(604 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g63160.1 68414.m07138 replication factor C 40 kDa, putative s... 32 0.34
At5g66630.1 68418.m08398 LIM domain-containing protein contains ... 30 1.0
At1g79810.2 68414.m09319 Pex2/Pex12 N-terminal domain-containing... 30 1.0
At1g79810.1 68414.m09318 Pex2/Pex12 N-terminal domain-containing... 30 1.0
At3g56690.1 68416.m06306 calmodulin-binding protein identical to... 30 1.4
At5g14760.1 68418.m01732 L-aspartate oxidase family protein simi... 29 1.8
At5g66910.1 68418.m08434 disease resistance protein (CC-NBS-LRR ... 29 2.4
At5g22330.1 68418.m02605 TATA box-binding protein-interacting pr... 29 2.4
At5g20040.2 68418.m02385 tRNA isopentenyltransferase 9 / IPP tra... 29 3.1
At5g20040.1 68418.m02384 tRNA isopentenyltransferase 9 / IPP tra... 29 3.1
At2g16750.1 68415.m01921 protein kinase family protein contains ... 29 3.1
At4g04180.1 68417.m00593 AAA-type ATPase family protein contains... 28 4.1
At3g05790.1 68416.m00650 Lon protease, putative similar to Lon p... 28 4.1
At5g26860.1 68418.m03204 Lon protease homolog 2, mitochondrial a... 28 5.5
At3g05780.1 68416.m00649 Lon protease, putative similar to Lon p... 27 7.2
At5g66900.1 68418.m08433 disease resistance protein (CC-NBS-LRR ... 27 9.6
At5g64580.1 68418.m08116 AAA-type ATPase family protein similar ... 27 9.6
At1g79560.1 68414.m09275 FtsH protease, putative contains simila... 27 9.6
>At1g63160.1 68414.m07138 replication factor C 40 kDa, putative
similar to SWISS-PROT:Q9WUK4 activator 1 40 kDa subunit
(Replication factor C 40 kDa subunit, A1 40 kDa subunit,
RF-C 40 kDa subunit, RFC40) [Mus musculus]
Length = 333
Score = 31.9 bits (69), Expect = 0.34
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +2
Query: 296 DDNSKVIIVEGPVAAGKTAFAASLADDLGMKHFPEANMDLHYIRPNGVDL 445
D N +I+ GP GKT +LA +L ++ EA ++L+ G+D+
Sbjct: 45 DGNMPNLILSGPPGTGKTTSILALAHELLGTNYKEAVLELNASDDRGIDV 94
>At5g66630.1 68418.m08398 LIM domain-containing protein contains low
similarity to Pfam profile PF00412: LIM domain
Length = 702
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +2
Query: 257 WL-RSLIDRTTHRFDDNSKVIIVEGPVAAGKTAFAASLADDLGMK 388
WL R L++ F+D ++V P A GKT L D +K
Sbjct: 171 WLKRPLMELKKMLFEDGVVTVVVSAPYALGKTTLVTKLCHDADVK 215
>At1g79810.2 68414.m09319 Pex2/Pex12 N-terminal domain-containing
protein / zinc finger (C3HC4-type RING finger) family
protein contains Pfam profiles PF00097: zinc finger
C3HC4 type (RING finger), PF04757: Pex2/Pex12 amino
terminal region
Length = 282
Score = 30.3 bits (65), Expect = 1.0
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 332 PALPRLSLCCYHQTCGSCGRLSCATKCS 249
PA+P ++L C H+ C C R CA+ S
Sbjct: 233 PAIPFIALPCQHRYCYYCIRTRCASAAS 260
>At1g79810.1 68414.m09318 Pex2/Pex12 N-terminal domain-containing
protein / zinc finger (C3HC4-type RING finger) family
protein contains Pfam profiles PF00097: zinc finger
C3HC4 type (RING finger), PF04757: Pex2/Pex12 amino
terminal region
Length = 333
Score = 30.3 bits (65), Expect = 1.0
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 332 PALPRLSLCCYHQTCGSCGRLSCATKCS 249
PA+P ++L C H+ C C R CA+ S
Sbjct: 284 PAIPFIALPCQHRYCYYCIRTRCASAAS 311
>At3g56690.1 68416.m06306 calmodulin-binding protein identical to
calmodulin-binding protein GI:6760428 from [Arabidopsis
thaliana]
Length = 1022
Score = 29.9 bits (64), Expect = 1.4
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Frame = +2
Query: 239 VNKDYTWLRSLIDRTTHRFDDNS------KVIIVEGPVAAGKTAFAASLADDLGMKHF 394
++K+Y LR +ID ++ + +S K +++ GP GKT+ A + A G+ F
Sbjct: 390 LSKEYAILRDIIDSSSIKNSLSSLGLRPTKGVLIHGPPGTGKTSLARTFARHSGVNFF 447
>At5g14760.1 68418.m01732 L-aspartate oxidase family protein similar
to L-aspartate oxidase, Escherichia coli [SP|P10902];
contains Pfam profiles PF00890 FAD binding domain,
PF02910 Fumarate reductase/succinate dehydrogenase
flavoprotein C-terminal domain
Length = 651
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = +2
Query: 374 DLGMKHFPEANMDLHYIRPNGVDLRSFDDQVPEDTRTFDHVNFNQNPNHRLAANF 538
+LGM+ F + + P V RS DDQ+ + + ++ + P ++ A+F
Sbjct: 349 NLGMERFMPVYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPREKILAHF 403
>At5g66910.1 68418.m08434 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 815
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 299 DNSKVIIVEGPVAAGKTAFAASLADD 376
DNS V++V GP GKT L DD
Sbjct: 188 DNS-VVVVSGPPGCGKTTLVTKLCDD 212
>At5g22330.1 68418.m02605 TATA box-binding protein-interacting
protein-related similar to TATA box-binding
protein-interacting protein SP:O35753 from [ Mus
musculus]
Length = 458
Score = 29.1 bits (62), Expect = 2.4
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 308 KVIIVEGPVAAGKTAFAASLADDLGMK 388
K +++ GP GKTA A ++ +LG K
Sbjct: 67 KALLLAGPPGTGKTALALGISQELGSK 93
>At5g20040.2 68418.m02385 tRNA isopentenyltransferase 9 / IPP
transferase 9 (IPT9) identical to tRNA
isopentenyltransferase (IPT9) [Arabidopsis thaliana]
GI:14279070
Length = 459
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 299 DNSKVIIVEGPVAAGKTAFAASLADDL 379
+ KVI++ GP AGK+ A LA L
Sbjct: 48 EKEKVIVISGPTGAGKSRLAMELAKRL 74
>At5g20040.1 68418.m02384 tRNA isopentenyltransferase 9 / IPP
transferase 9 (IPT9) identical to tRNA
isopentenyltransferase (IPT9) [Arabidopsis thaliana]
GI:14279070
Length = 463
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 299 DNSKVIIVEGPVAAGKTAFAASLADDL 379
+ KVI++ GP AGK+ A LA L
Sbjct: 48 EKEKVIVISGPTGAGKSRLAMELAKRL 74
>At2g16750.1 68415.m01921 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 617
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = -1
Query: 556 HIHHYLEVCSQAMVRILIEINMVKGPSVLGYLVVEGPQVDAV 431
++ Y+E CS + + E+ +KG SVLG LV E + +A+
Sbjct: 64 YLKPYIEFCSTKKIELKGEV--LKGNSVLGVLVKEAKRYNAM 103
>At4g04180.1 68417.m00593 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 609
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Frame = +2
Query: 269 LIDRTTHRFDDNS-KVIIVEGPVAAGKTAFAASLADDLG--MKHFP-EANMDLHY 421
++ T +F+ N + ++ EGP GKT+ A +A+ G + + P EA M +Y
Sbjct: 348 IVRGTRSKFESNRPRAVLFEGPPGTGKTSCARVIANQAGIPLLYVPLEAVMSKYY 402
>At3g05790.1 68416.m00650 Lon protease, putative similar to Lon
protease homolog 2 SP:P93655
Length = 942
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 290 RFDDNSKVIIVEGPVAAGKTAFAASLADDLGMKHF 394
R K+I + GP GKT+ S+A L K F
Sbjct: 444 RGTSQGKIICLSGPTGVGKTSIGRSIARALDRKFF 478
>At5g26860.1 68418.m03204 Lon protease homolog 2, mitochondrial
almost identical to Lon protease homolog 2
mitochondrial precursor SP:P93655, GI:1848290 from
[Arabidopsis thaliana]
Length = 940
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 290 RFDDNSKVIIVEGPVAAGKTAFAASLADDLGMKHF 394
R K+I + GP GKT+ S+A L K F
Sbjct: 452 RGTSQGKIICLSGPPGVGKTSIGRSIARALNRKFF 486
>At3g05780.1 68416.m00649 Lon protease, putative similar to Lon
protease homolog 2 SP:P93655
Length = 924
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 290 RFDDNSKVIIVEGPVAAGKTAFAASLADDLGMKHF 394
R K+I + GP GKT+ S+A L K F
Sbjct: 435 RGTSQGKIICLSGPPGVGKTSIGRSIARALDRKFF 469
>At5g66900.1 68418.m08433 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 809
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +2
Query: 296 DDNSKVIIVEGPVAAGKTAFAASLADDLGMK 388
DD+ ++V P GKT + L DD +K
Sbjct: 184 DDSVVTLVVSAPPGCGKTTLVSRLCDDPDIK 214
>At5g64580.1 68418.m08116 AAA-type ATPase family protein similar to
zinc dependent protease [Arabidopsis thaliana]
GI:7650138; contains Pfam profile PF00004: ATPase AAA
family
Length = 855
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +2
Query: 308 KVIIVEGPVAAGKTAFAASLADDLGMKHFPEANMD 412
K +++ GP GKT A ++A + G+ F D
Sbjct: 350 KGVLLHGPPGTGKTLLAKAIAGEAGLPFFAANGTD 384
>At1g79560.1 68414.m09275 FtsH protease, putative contains
similarity to chloroplast FtsH protease GI:5804782 from
[Nicotiana tabacum]
Length = 1008
Score = 27.1 bits (57), Expect = 9.6
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 314 IIVEGPVAAGKTAFAASLADDLGM 385
+++ GP GKT FA +LA + G+
Sbjct: 529 VLLSGPPGTGKTLFARTLAKESGL 552
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,462,107
Number of Sequences: 28952
Number of extensions: 243324
Number of successful extensions: 690
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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