Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n04r
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    33   0.042
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    26   4.8  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    26   4.8  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    26   6.3  
SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|c...    25   8.4  
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    25   8.4  

>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 33.1 bits (72), Expect = 0.042
 Identities = 17/63 (26%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
 Frame = +1

Query: 373 LGATMAGSATITGATLGPSATITGLGT-MMAGSAMITGETAGFSSTFDCSGSTLSTGVAL 549
           L +++  SA+++ +++ P++ IT   T +   S+ ++  T  +S+    +GST +TG A 
Sbjct: 229 LPSSVISSASLSSSSVLPTSIITSTSTPVTVSSSSLSSFTPSYSTNLTTTGSTTTTGSAT 288

Query: 550 AAS 558
            +S
Sbjct: 289 VSS 291


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
 Frame = -2

Query: 671 PDVGPALVEAPIVPSP--VHVGPLVPG-QLTPLVHILININDAASATPVESVEPEQSNVE 501
           P V P + EAP VP P    V P VP     P V ++     +    P   V PE  +V 
Sbjct: 592 PPVAPVVPEAPSVPQPPVAPVAPEVPSVPQRPAVPVVPEA-PSVPQPPAAPVVPEVPSVP 650

Query: 500 EK 495
           ++
Sbjct: 651 QR 652


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -2

Query: 662 GPALVEA-PIVPSPVHVGPLVPGQLTPLVHILINI 561
           G AL+   PIV S  H+ P   G+L P +H  +++
Sbjct: 781 GAALLSKFPIVNSTHHLLPSPQGELAPAIHATLDV 815


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 31/105 (29%), Positives = 42/105 (40%), Gaps = 3/105 (2%)
 Frame = +1

Query: 370 GLGATMAGSATITGATLGPSATITGLGTMMAGSAMITGETAGFSSTFDCSGSTLSTGVAL 549
           G     A +AT TG +L  +A   G  + M GSA  +    G   +   + +T +TG  L
Sbjct: 500 GANTNTATNATGTGGSLFGNANTAG--SNMFGSANSSTPGTGLFGSTQTNNATSNTGTGL 557

Query: 550 AASLMLIRMWTRGVSCPGTRGPTWTGDGTMGASTRAGP---TSGL 675
             S       T G        P+ T  G  G +T   P   TSGL
Sbjct: 558 FGSNNANTTNTGGSL---FNKPSTTTGGLFGNTTAQQPSTTTSGL 599


>SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 579

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +1

Query: 388 AGSATI-TGATLGPSATITGLGTMMAGSAMITGETAGFSS 504
           AG  T+  G  LG     T LGT++  + MIT    GF +
Sbjct: 199 AGLGTLFAGLGLGTMIGATYLGTLITSAPMITALFGGFGA 238


>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
            Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +3

Query: 402  DHRGYTRSLGNNYRARYYDGRISNDHGRNSRLFFNI 509
            D+R Y    G  +  RYYD R++   G      +N+
Sbjct: 895  DNRHYQILQGFTFLYRYYDLRVNEGLGEKQEALYNL 930


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,919,653
Number of Sequences: 5004
Number of extensions: 31013
Number of successful extensions: 130
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)