Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11n04r
(729 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25797| Best HMM Match : Extensin_2 (HMM E-Value=0.55) 32 0.41
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.72
SB_13184| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.72
SB_25379| Best HMM Match : Keratin_B2 (HMM E-Value=2.5) 31 0.96
SB_50253| Best HMM Match : HYR (HMM E-Value=2.6e-20) 31 1.3
SB_38992| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_34021| Best HMM Match : Zip (HMM E-Value=0) 30 2.2
SB_22798| Best HMM Match : Cadherin (HMM E-Value=0) 30 2.2
SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13) 29 2.9
SB_47083| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_725| Best HMM Match : Apolipoprotein (HMM E-Value=0.51) 29 3.9
SB_40869| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_34739| Best HMM Match : DUF360 (HMM E-Value=0.39) 28 6.7
SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0) 28 6.7
SB_42336| Best HMM Match : Sushi (HMM E-Value=1.5e-08) 28 8.9
SB_13265| Best HMM Match : IncA (HMM E-Value=0.32) 28 8.9
SB_54180| Best HMM Match : Mfp-3 (HMM E-Value=1.9) 28 8.9
SB_37199| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
>SB_25797| Best HMM Match : Extensin_2 (HMM E-Value=0.55)
Length = 910
Score = 32.3 bits (70), Expect = 0.41
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +3
Query: 333 HGGHQGHVTNVHWARGHNGGV-SHDHRGYTRSLGNNYR 443
+G HQGH+ N +GH G V +++H TRS G Y+
Sbjct: 777 YGAHQGHMCNGLPEKGHYGDVGAYEHAMDTRSPGYPYK 814
>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4072
Score = 31.5 bits (68), Expect = 0.72
Identities = 24/96 (25%), Positives = 38/96 (39%)
Frame = +1
Query: 391 GSATITGATLGPSATITGLGTMMAGSAMITGETAGFSSTFDCSGSTLSTGVALAASLMLI 570
G+ + +T+ P T+ T+ G+ + + T +T S STL+ G +
Sbjct: 685 GTTVLPESTVSPGTTVATESTVTRGTTVASEGTDALVTTVS-SESTLTPGTTVLPKSTAS 743
Query: 571 RMWTRGVSCPGTRGPTWTGDGTMGASTRAGPTSGLS 678
T TRG T +GT T P S L+
Sbjct: 744 PGITVASESTVTRGTTVASEGTDALVTTVSPESTLT 779
>SB_13184| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1297
Score = 31.5 bits (68), Expect = 0.72
Identities = 35/103 (33%), Positives = 45/103 (43%), Gaps = 1/103 (0%)
Frame = +1
Query: 370 GLGATMAGSATITGATLGPSATITGLGTMMAGSAMITGETAGFSSTFDCSGSTLSTGVAL 549
G T AG GAT +AT T GT + G + G+T+ SS F +T +TG
Sbjct: 377 GTTTTQAGGLFGGGATGFGAATGT-TGTGLFGQSTGFGQTSQQSSLFGNKLATSTTGFGA 435
Query: 550 AASLMLIRMWTRGVSCPGTR-GPTWTGDGTMGASTRAGPTSGL 675
+ L+ + P T G T G GT GA T T GL
Sbjct: 436 TNTGGLLGL---SAQKPATGFGTTGLGTGTFGAGTTG--TQGL 473
>SB_25379| Best HMM Match : Keratin_B2 (HMM E-Value=2.5)
Length = 442
Score = 31.1 bits (67), Expect = 0.96
Identities = 15/51 (29%), Positives = 30/51 (58%)
Frame = -2
Query: 647 EAPIVPSPVHVGPLVPGQLTPLVHILININDAASATPVESVEPEQSNVEEK 495
+ PI P P + + G L +++++ND +A PVE+V+ +Q++ + K
Sbjct: 348 KGPISPDPA-IMEEIDGLSNTLDDLILSLNDVDTAEPVENVDIDQADADCK 397
>SB_50253| Best HMM Match : HYR (HMM E-Value=2.6e-20)
Length = 525
Score = 30.7 bits (66), Expect = 1.3
Identities = 24/78 (30%), Positives = 36/78 (46%)
Frame = +1
Query: 442 GLGTMMAGSAMITGETAGFSSTFDCSGSTLSTGVALAASLMLIRMWTRGVSCPGTRGPTW 621
G G ++ ITG S ++C+GS S G A+A + + + + GV+ G G +
Sbjct: 413 GSGAVIGKKLTITGALKENSGLYECTGSN-SWGNAIAVASLTVEISGSGVAV-GDEGQSL 470
Query: 622 TGDGTMGASTRAGPTSGL 675
T S R TSGL
Sbjct: 471 TVHRHNVTSLRHHVTSGL 488
>SB_38992| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 139
Score = 30.7 bits (66), Expect = 1.3
Identities = 23/69 (33%), Positives = 27/69 (39%), Gaps = 4/69 (5%)
Frame = +3
Query: 300 ARGHNGRVSHDHGG----HQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRI 467
+R +G DHGG H G + R +GG DH G R G R GR
Sbjct: 2 SRRDHGSTRRDHGGTGRDHGGTRRDHGGTRRDHGGTGRDHGGTGRDHGGTGRDHGGTGR- 60
Query: 468 SNDHGRNSR 494
DHG R
Sbjct: 61 --DHGGTGR 67
Score = 29.9 bits (64), Expect = 2.2
Identities = 24/68 (35%), Positives = 26/68 (38%), Gaps = 4/68 (5%)
Frame = +3
Query: 303 RGHNGRVSHDHGGHQ---GHVTNVHWARGHN-GGVSHDHRGYTRSLGNNYRARYYDGRIS 470
R H G DHGG + G H G + GG DH G R G R GR
Sbjct: 11 RDHGG-TGRDHGGTRRDHGGTRRDHGGTGRDHGGTGRDHGGTGRDHGGTGRDHGGTGR-- 67
Query: 471 NDHGRNSR 494
DHG R
Sbjct: 68 -DHGGTGR 74
Score = 29.9 bits (64), Expect = 2.2
Identities = 23/68 (33%), Positives = 25/68 (36%), Gaps = 4/68 (5%)
Frame = +3
Query: 303 RGHNGRVSHDHGG----HQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRIS 470
R H G DHGG H G + R +GG DH G R G R G
Sbjct: 60 RDHGG-TGRDHGGTGRDHGGTRRDHDGTRRDHGGTRRDHGGTRRDHGGTRRDH---GGTR 115
Query: 471 NDHGRNSR 494
DHG R
Sbjct: 116 RDHGGTRR 123
>SB_34021| Best HMM Match : Zip (HMM E-Value=0)
Length = 808
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Frame = +3
Query: 306 GHNGRVSHDHGGHQ----GHVTNVHWARGHNGGVSHDHRGYTR-SLGNNYRARYYDGRIS 470
GH+ SH++ GH GH H N G SH H G++ + G+++ + S
Sbjct: 310 GHSHGHSHENHGHSHENHGHSHENHGHSHENHGHSHKHHGHSHDNHGHSHENHGHSHGHS 369
Query: 471 NDHGRNSRLF 500
++H L+
Sbjct: 370 HEHEPKQDLY 379
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = +3
Query: 333 HGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHGRN 488
HG GH H N G SH++ G++ N+ + + G ++HG +
Sbjct: 309 HGHSHGHSHENHGHSHENHGHSHENHGHSHE--NHGHSHKHHGHSHDNHGHS 358
>SB_22798| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 3255
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -2
Query: 593 LTPLVHILININDAASATPVESVEPEQSNVEE 498
LT H+LIN+ND PV S QS V+E
Sbjct: 597 LTDTSHLLINVNDINDNPPVFSPSAYQSRVKE 628
>SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)
Length = 492
Score = 29.5 bits (63), Expect = 2.9
Identities = 20/60 (33%), Positives = 25/60 (41%)
Frame = +3
Query: 303 RGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHG 482
R H+ R H HGG G+ + GH GG H H G G+ + DG HG
Sbjct: 123 RSHSHR--HAHGGGPGYGGDYGGGLGHCGGPGHGH-GPGHGHGHGAGLVHGDGGPGPGHG 179
>SB_47083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 211
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +3
Query: 471 NDHGRNSRLFFNI*LFRFDAFNGGSAGSIVDVNKNVDER 587
N+ G L+ I LFR N GS DV K+ DER
Sbjct: 23 NERGNQFSLYQKIDLFRLQCLNEAEEGSGKDVFKSWDER 61
>SB_725| Best HMM Match : Apolipoprotein (HMM E-Value=0.51)
Length = 567
Score = 29.1 bits (62), Expect = 3.9
Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
Frame = +1
Query: 412 ATLGPSATITGLGTMMAGSAMITGETAGFSST---FDCSGSTL-STGVALAASLMLIRMW 579
AT G TGLGT G+ AGF +T F +G+ +TG +
Sbjct: 76 ATTGFGTATTGLGTSAFGTTGTGFGAAGFGNTGTGFGTTGTGFGTTGTGFGTTGTGFGTI 135
Query: 580 TRGVSCPGTRGPTWTGDGTMGAST 651
G++ G G T TG GT G T
Sbjct: 136 GTGLATAGF-GTTGTGFGTTGFGT 158
>SB_40869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 412
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +3
Query: 300 ARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNY 440
A GH ++H H H A H G++H H T+ L ++Y
Sbjct: 214 AHGHTKGLAHSHTKGLAHSHTKGLAHSHTKGLAHSH---TKGLAHSY 257
>SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1141
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +3
Query: 312 NGRVSHDHGG--HQGHVTNVHWARGHNGGVSHDHRGYTR 422
+GR++ GG H+++ RG GGVS H G+ R
Sbjct: 1059 HGRLTRGDGGGASSAHISHGRLTRGDGGGVSSAHIGHGR 1097
>SB_34739| Best HMM Match : DUF360 (HMM E-Value=0.39)
Length = 1024
Score = 28.3 bits (60), Expect = 6.7
Identities = 30/87 (34%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
Frame = +1
Query: 388 AGSATITGATLG----PSATITGLGTMMAGSAMITGETAGFSSTFDCSGSTLSTGVALAA 555
A SA+ TGA LG P + G+ G A T G + CS ST TG A
Sbjct: 612 AWSASTTGARLGQHQPPGQGLVGINHR--GKAWSASTTGGKA----CSAST--TG----A 659
Query: 556 SLMLIRMWTRGVSCPGTRGPTWTGDGT 636
SL I W +G+ RG W+ T
Sbjct: 660 SLFSINHWGQGLVRINHRGKAWSASTT 686
>SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 919
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = +3
Query: 327 HDHGGHQGHVTNVHWA-RGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHGRNSR 494
H HGG + T+ H + H+ H HR + + + GR ++DH R
Sbjct: 417 HGHGGLEAIQTSKHQQDQHHHHHHHHHHRHHKHRSSSGHSTTEASGRRASDHSHEMR 473
>SB_42336| Best HMM Match : Sushi (HMM E-Value=1.5e-08)
Length = 303
Score = 27.9 bits (59), Expect = 8.9
Identities = 19/67 (28%), Positives = 25/67 (37%), Gaps = 2/67 (2%)
Frame = +1
Query: 430 ATITGLGTMMAGSAMITGETAGFSSTFDCS-GSTLSTGVALAASLMLIRMWTRG-VSCPG 603
+T+TG AG G AG F C G L A + + +W+ SC
Sbjct: 97 STVTGTTVSPAGCTQTGGAYAGIHCVFSCQPGYKLPENTANSVTCQSTGLWSGSPTSCQK 156
Query: 604 TRGPTWT 624
R P T
Sbjct: 157 KRCPALT 163
>SB_13265| Best HMM Match : IncA (HMM E-Value=0.32)
Length = 339
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +1
Query: 370 GLGATMAGSATITGATLGPSATITGLGTMMAGSAMITGETAGFSS 504
G+G +++G + G L A + G+G + AG+ ++ + GF+S
Sbjct: 202 GVGVSLSGIGVLIGGPLAGVAGLVGVGVVGAGAGVV---SRGFTS 243
>SB_54180| Best HMM Match : Mfp-3 (HMM E-Value=1.9)
Length = 125
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 327 HDHGGHQGHVTNVHWARGHNGGVSHDHRGYT 419
HD+GGH H+ GH+ G+ HD+ G+T
Sbjct: 83 HDYGGHD------HYDGGHHDGMHHDY-GHT 106
>SB_37199| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 461
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 312 NGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGY 416
+G SHD G H + + GH+G SHD G+
Sbjct: 5 DGVDSHDDDGDDSHDDDGDDSHGHDGVESHDGYGF 39
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,231,926
Number of Sequences: 59808
Number of extensions: 261036
Number of successful extensions: 948
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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