Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11n04f
(624 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25797| Best HMM Match : Extensin_2 (HMM E-Value=0.55) 32 0.33
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.57
SB_13184| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.57
SB_25379| Best HMM Match : Keratin_B2 (HMM E-Value=2.5) 31 0.76
SB_50253| Best HMM Match : HYR (HMM E-Value=2.6e-20) 31 1.0
SB_38992| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_34021| Best HMM Match : Zip (HMM E-Value=0) 30 1.8
SB_22798| Best HMM Match : Cadherin (HMM E-Value=0) 30 1.8
SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13) 29 2.3
SB_47083| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_725| Best HMM Match : Apolipoprotein (HMM E-Value=0.51) 29 3.1
SB_40869| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_34739| Best HMM Match : DUF360 (HMM E-Value=0.39) 28 5.4
SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0) 28 5.4
SB_42336| Best HMM Match : Sushi (HMM E-Value=1.5e-08) 28 7.1
SB_13265| Best HMM Match : IncA (HMM E-Value=0.32) 28 7.1
SB_54180| Best HMM Match : Mfp-3 (HMM E-Value=1.9) 28 7.1
SB_37199| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_13470| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_9681| Best HMM Match : IncA (HMM E-Value=0.58) 27 9.4
SB_4670| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042) 27 9.4
SB_19891| Best HMM Match : Keratin (HMM E-Value=0.96) 27 9.4
SB_15566| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_8396| Best HMM Match : Spb1_C (HMM E-Value=0.65) 27 9.4
>SB_25797| Best HMM Match : Extensin_2 (HMM E-Value=0.55)
Length = 910
Score = 32.3 bits (70), Expect = 0.33
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = -2
Query: 449 HGGHQGHVTNVHWARGHNGGV-SHDHRGYTRSLGNNYR 339
+G HQGH+ N +GH G V +++H TRS G Y+
Sbjct: 777 YGAHQGHMCNGLPEKGHYGDVGAYEHAMDTRSPGYPYK 814
>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4072
Score = 31.5 bits (68), Expect = 0.57
Identities = 24/96 (25%), Positives = 38/96 (39%)
Frame = -3
Query: 391 GSATITGATLGPSATITGLGTMMAGSAMITGETAGFSSTFDCSGSTLSTGVALAASLMLI 212
G+ + +T+ P T+ T+ G+ + + T +T S STL+ G +
Sbjct: 685 GTTVLPESTVSPGTTVATESTVTRGTTVASEGTDALVTTVS-SESTLTPGTTVLPKSTAS 743
Query: 211 RMWTRGVSCPGTRGPTWTGDGTMGASTRAGPTSGLS 104
T TRG T +GT T P S L+
Sbjct: 744 PGITVASESTVTRGTTVASEGTDALVTTVSPESTLT 779
>SB_13184| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1297
Score = 31.5 bits (68), Expect = 0.57
Identities = 35/103 (33%), Positives = 45/103 (43%), Gaps = 1/103 (0%)
Frame = -3
Query: 412 GLGATMAGSATITGATLGPSATITGLGTMMAGSAMITGETAGFSSTFDCSGSTLSTGVAL 233
G T AG GAT +AT T GT + G + G+T+ SS F +T +TG
Sbjct: 377 GTTTTQAGGLFGGGATGFGAATGT-TGTGLFGQSTGFGQTSQQSSLFGNKLATSTTGFGA 435
Query: 232 AASLMLIRMWTRGVSCPGTR-GPTWTGDGTMGASTRAGPTSGL 107
+ L+ + P T G T G GT GA T T GL
Sbjct: 436 TNTGGLLGL---SAQKPATGFGTTGLGTGTFGAGTTG--TQGL 473
>SB_25379| Best HMM Match : Keratin_B2 (HMM E-Value=2.5)
Length = 442
Score = 31.1 bits (67), Expect = 0.76
Identities = 15/51 (29%), Positives = 30/51 (58%)
Frame = +3
Query: 135 EAPIVPSPVHVGPLVPGQLTPLVHILININDAASATPVESVEPEQSNVEEK 287
+ PI P P + + G L +++++ND +A PVE+V+ +Q++ + K
Sbjct: 348 KGPISPDPA-IMEEIDGLSNTLDDLILSLNDVDTAEPVENVDIDQADADCK 397
>SB_50253| Best HMM Match : HYR (HMM E-Value=2.6e-20)
Length = 525
Score = 30.7 bits (66), Expect = 1.0
Identities = 24/78 (30%), Positives = 36/78 (46%)
Frame = -3
Query: 340 GLGTMMAGSAMITGETAGFSSTFDCSGSTLSTGVALAASLMLIRMWTRGVSCPGTRGPTW 161
G G ++ ITG S ++C+GS S G A+A + + + + GV+ G G +
Sbjct: 413 GSGAVIGKKLTITGALKENSGLYECTGSN-SWGNAIAVASLTVEISGSGVAV-GDEGQSL 470
Query: 160 TGDGTMGASTRAGPTSGL 107
T S R TSGL
Sbjct: 471 TVHRHNVTSLRHHVTSGL 488
>SB_38992| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 139
Score = 30.7 bits (66), Expect = 1.0
Identities = 23/69 (33%), Positives = 27/69 (39%), Gaps = 4/69 (5%)
Frame = -2
Query: 482 ARGHNGRVSHDHGG----HQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRI 315
+R +G DHGG H G + R +GG DH G R G R GR
Sbjct: 2 SRRDHGSTRRDHGGTGRDHGGTRRDHGGTRRDHGGTGRDHGGTGRDHGGTGRDHGGTGR- 60
Query: 314 SNDHGRNSR 288
DHG R
Sbjct: 61 --DHGGTGR 67
Score = 29.9 bits (64), Expect = 1.8
Identities = 24/68 (35%), Positives = 26/68 (38%), Gaps = 4/68 (5%)
Frame = -2
Query: 479 RGHNGRVSHDHGGHQ---GHVTNVHWARGHN-GGVSHDHRGYTRSLGNNYRARYYDGRIS 312
R H G DHGG + G H G + GG DH G R G R GR
Sbjct: 11 RDHGG-TGRDHGGTRRDHGGTRRDHGGTGRDHGGTGRDHGGTGRDHGGTGRDHGGTGR-- 67
Query: 311 NDHGRNSR 288
DHG R
Sbjct: 68 -DHGGTGR 74
Score = 29.9 bits (64), Expect = 1.8
Identities = 23/68 (33%), Positives = 25/68 (36%), Gaps = 4/68 (5%)
Frame = -2
Query: 479 RGHNGRVSHDHGG----HQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRIS 312
R H G DHGG H G + R +GG DH G R G R G
Sbjct: 60 RDHGG-TGRDHGGTGRDHGGTRRDHDGTRRDHGGTRRDHGGTRRDHGGTRRDH---GGTR 115
Query: 311 NDHGRNSR 288
DHG R
Sbjct: 116 RDHGGTRR 123
>SB_34021| Best HMM Match : Zip (HMM E-Value=0)
Length = 808
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Frame = -2
Query: 476 GHNGRVSHDHGGHQ----GHVTNVHWARGHNGGVSHDHRGYTR-SLGNNYRARYYDGRIS 312
GH+ SH++ GH GH H N G SH H G++ + G+++ + S
Sbjct: 310 GHSHGHSHENHGHSHENHGHSHENHGHSHENHGHSHKHHGHSHDNHGHSHENHGHSHGHS 369
Query: 311 NDHGRNSRLF 282
++H L+
Sbjct: 370 HEHEPKQDLY 379
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = -2
Query: 449 HGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHGRN 294
HG GH H N G SH++ G++ N+ + + G ++HG +
Sbjct: 309 HGHSHGHSHENHGHSHENHGHSHENHGHSHE--NHGHSHKHHGHSHDNHGHS 358
>SB_22798| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 3255
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +3
Query: 189 LTPLVHILININDAASATPVESVEPEQSNVEE 284
LT H+LIN+ND PV S QS V+E
Sbjct: 597 LTDTSHLLINVNDINDNPPVFSPSAYQSRVKE 628
>SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)
Length = 492
Score = 29.5 bits (63), Expect = 2.3
Identities = 20/60 (33%), Positives = 25/60 (41%)
Frame = -2
Query: 479 RGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHG 300
R H+ R H HGG G+ + GH GG H H G G+ + DG HG
Sbjct: 123 RSHSHR--HAHGGGPGYGGDYGGGLGHCGGPGHGH-GPGHGHGHGAGLVHGDGGPGPGHG 179
>SB_47083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 211
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = -2
Query: 311 NDHGRNSRLFFNI*LFRFDAFNGGSAGSIVDVNKNVDER 195
N+ G L+ I LFR N GS DV K+ DER
Sbjct: 23 NERGNQFSLYQKIDLFRLQCLNEAEEGSGKDVFKSWDER 61
>SB_725| Best HMM Match : Apolipoprotein (HMM E-Value=0.51)
Length = 567
Score = 29.1 bits (62), Expect = 3.1
Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
Frame = -3
Query: 370 ATLGPSATITGLGTMMAGSAMITGETAGFSST---FDCSGSTL-STGVALAASLMLIRMW 203
AT G TGLGT G+ AGF +T F +G+ +TG +
Sbjct: 76 ATTGFGTATTGLGTSAFGTTGTGFGAAGFGNTGTGFGTTGTGFGTTGTGFGTTGTGFGTI 135
Query: 202 TRGVSCPGTRGPTWTGDGTMGAST 131
G++ G G T TG GT G T
Sbjct: 136 GTGLATAGF-GTTGTGFGTTGFGT 158
>SB_40869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 412
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -2
Query: 482 ARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNY 342
A GH ++H H H A H G++H H T+ L ++Y
Sbjct: 214 AHGHTKGLAHSHTKGLAHSHTKGLAHSHTKGLAHSH---TKGLAHSY 257
>SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1141
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -2
Query: 470 NGRVSHDHGG--HQGHVTNVHWARGHNGGVSHDHRGYTR 360
+GR++ GG H+++ RG GGVS H G+ R
Sbjct: 1059 HGRLTRGDGGGASSAHISHGRLTRGDGGGVSSAHIGHGR 1097
>SB_34739| Best HMM Match : DUF360 (HMM E-Value=0.39)
Length = 1024
Score = 28.3 bits (60), Expect = 5.4
Identities = 30/87 (34%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
Frame = -3
Query: 394 AGSATITGATLG----PSATITGLGTMMAGSAMITGETAGFSSTFDCSGSTLSTGVALAA 227
A SA+ TGA LG P + G+ G A T G + CS ST TG A
Sbjct: 612 AWSASTTGARLGQHQPPGQGLVGINHR--GKAWSASTTGGKA----CSAST--TG----A 659
Query: 226 SLMLIRMWTRGVSCPGTRGPTWTGDGT 146
SL I W +G+ RG W+ T
Sbjct: 660 SLFSINHWGQGLVRINHRGKAWSASTT 686
>SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 919
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = -2
Query: 455 HDHGGHQGHVTNVHWA-RGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHGRNSR 288
H HGG + T+ H + H+ H HR + + + GR ++DH R
Sbjct: 417 HGHGGLEAIQTSKHQQDQHHHHHHHHHHRHHKHRSSSGHSTTEASGRRASDHSHEMR 473
>SB_42336| Best HMM Match : Sushi (HMM E-Value=1.5e-08)
Length = 303
Score = 27.9 bits (59), Expect = 7.1
Identities = 19/67 (28%), Positives = 25/67 (37%), Gaps = 2/67 (2%)
Frame = -3
Query: 352 ATITGLGTMMAGSAMITGETAGFSSTFDCS-GSTLSTGVALAASLMLIRMWTRG-VSCPG 179
+T+TG AG G AG F C G L A + + +W+ SC
Sbjct: 97 STVTGTTVSPAGCTQTGGAYAGIHCVFSCQPGYKLPENTANSVTCQSTGLWSGSPTSCQK 156
Query: 178 TRGPTWT 158
R P T
Sbjct: 157 KRCPALT 163
>SB_13265| Best HMM Match : IncA (HMM E-Value=0.32)
Length = 339
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = -3
Query: 412 GLGATMAGSATITGATLGPSATITGLGTMMAGSAMITGETAGFSS 278
G+G +++G + G L A + G+G + AG+ ++ + GF+S
Sbjct: 202 GVGVSLSGIGVLIGGPLAGVAGLVGVGVVGAGAGVV---SRGFTS 243
>SB_54180| Best HMM Match : Mfp-3 (HMM E-Value=1.9)
Length = 125
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -2
Query: 455 HDHGGHQGHVTNVHWARGHNGGVSHDHRGYT 363
HD+GGH H+ GH+ G+ HD+ G+T
Sbjct: 83 HDYGGHD------HYDGGHHDGMHHDY-GHT 106
>SB_37199| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 461
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 470 NGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGY 366
+G SHD G H + + GH+G SHD G+
Sbjct: 5 DGVDSHDDDGDDSHDDDGDDSHGHDGVESHDGYGF 39
>SB_13470| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1483
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -2
Query: 479 RGHNGRVSHDHGGHQGHVTNVHWA 408
+G N + + GH HVTNV WA
Sbjct: 875 KGKNAKFKK-YPGHSAHVTNVRWA 897
>SB_9681| Best HMM Match : IncA (HMM E-Value=0.58)
Length = 215
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = -3
Query: 412 GLGATMAGSATITGATLGPSATITGLGTMMAGSAMIT 302
G+G +++G + G L A + G+G + AG+ +++
Sbjct: 78 GVGVSLSGIGVLIGGPLAGVAGLVGVGVVGAGAGVVS 114
>SB_4670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1012
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -3
Query: 199 RGVSCPGTRGPTWTGDGTMGA 137
R +CP TRG T +G G GA
Sbjct: 449 RSSACPPTRGSTSSGSGAFGA 469
>SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)
Length = 628
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/39 (30%), Positives = 15/39 (38%)
Frame = -2
Query: 485 WARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRG 369
W RG G + GG G + W R GG+ G
Sbjct: 24 WGRGQGGGMGRGPGGGWGRGSGGGWGRMQGGGMGRGPGG 62
>SB_19891| Best HMM Match : Keratin (HMM E-Value=0.96)
Length = 209
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = -3
Query: 412 GLGATMAGSATITGATLGPSATITGLGTMMAGSAMIT 302
G+G +++G + G L A + G+G + AG+ +++
Sbjct: 94 GVGVSLSGIGVLIGGPLAGVAGLVGVGVVGAGAGIVS 130
>SB_15566| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1265
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -2
Query: 458 SHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRS 357
S H H+G VTN ++ DHRG RS
Sbjct: 831 SDSHRDHRGVVTNDRYSYYGRSDYQRDHRGLRRS 864
>SB_8396| Best HMM Match : Spb1_C (HMM E-Value=0.65)
Length = 1007
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/37 (29%), Positives = 24/37 (64%)
Frame = +3
Query: 177 VPGQLTPLVHILININDAASATPVESVEPEQSNVEEK 287
+ G L +++++ND +A PVE+V+ +Q++ + K
Sbjct: 4 IDGLSNTLDDLILSLNDVDTAEPVENVDIDQADADCK 40
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,504,929
Number of Sequences: 59808
Number of extensions: 206995
Number of successful extensions: 795
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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