Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n02r
         (447 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.05c |||signal recognition particle subunit |Schizosacch...    36   0.004
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr...    29   0.43 
SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces ...    28   0.57 
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy...    27   1.7  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   4.0  
SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1 |Schizosac...    24   9.3  

>SPCC1682.05c |||signal recognition particle subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 35.5 bits (78), Expect = 0.004
 Identities = 20/86 (23%), Positives = 41/86 (47%)
 Frame = -2

Query: 440 ARKNNIQIXGKKVRPQDLTRLYEIILQNYNELQQLPGFENDAVYQKEIDTQMKAYRAFRC 261
           A +N+ ++   + + +    LY+ I++N    ++LPG   D     +++ Q+   ++ RC
Sbjct: 376 AVENDSELVASQAQLRSRQSLYDSIIKNIEIAKELPGIARDTGMTAQLEAQISLAKSKRC 435

Query: 260 YYIAQVLTGLRRFREALAMLERCNTY 183
             IA       +   +LAM  R  +Y
Sbjct: 436 QAIADAYQAQDKL-ASLAMCVRAASY 460


>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 599

 Score = 28.7 bits (61), Expect = 0.43
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = -2

Query: 398 PQDLTRLYEIILQNYNELQQLPGFENDAVYQKEIDTQMKA 279
           P  LT+   I+   YNE QQ+PG ++D   ++E DT  ++
Sbjct: 553 PYRLTKSSIIVQPFYNEWQQIPGLDDD---EEEEDTDYES 589


>SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 285

 Score = 28.3 bits (60), Expect = 0.57
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
 Frame = -2

Query: 413 GKKVRPQDLTRLYEIILQNYNELQQLPGFEN-----DAVYQKEIDTQMKAYRAF 267
           G +V P D +  Y  + + Y E+  LP F         ++ ++  T+++AY AF
Sbjct: 152 GGRVEPSDGSHYYAALRETYEEIGFLPNFFTYLTTFPPLFTRDEKTEIRAYLAF 205


>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +2

Query: 107 LCPSSRLATCPLVVDCPVYF*AIQRYTCCIFRASLK 214
           L P+  L     +V+ P YF  IQRYT  +F+ +LK
Sbjct: 43  LDPNEGLFFVDNLVNTPTYF-YIQRYTALLFQNNLK 77


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 300  NRYANEGVSRVPLLLHRSSAHRTETLQGGFS 208
            N Y +  + ++PL L   S+   E L G FS
Sbjct: 1122 NLYISNPIFQIPLTLENGSSAMVEILPGSFS 1152


>SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +2

Query: 314 LRRSQSPATVAVHCNSAE*SRRAWSSLEAGLSFRRSVCCSCALL 445
           L  S SP++ +V  +S+  S  A  +   G+S    V C+  L+
Sbjct: 485 LTASASPSSTSVDGSSSSDSSEASGAASVGVSISAIVLCASTLI 528


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,399,999
Number of Sequences: 5004
Number of extensions: 23108
Number of successful extensions: 53
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)