Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n02r
         (447 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0195 - 14098865-14099083,14100209-14100352,14101820-141018...    42   3e-04

>08_02_0195 -
           14098865-14099083,14100209-14100352,14101820-14101833,
           14101919-14102006,14102303-14102426,14102959-14103068,
           14103142-14103348,14103441-14103568,14103781-14103892,
           14105678-14105695,14105917-14106109,14106274-14106359,
           14106494-14106582,14106817-14106863,14107424-14107534,
           14110252-14110318,14110419-14110509
          Length = 615

 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
 Frame = -2

Query: 410 KKVRPQDLTRLYEIILQNYNELQQLPGFENDA-----VYQKEIDTQMKAYRAFRCYYIAQ 246
           K  +P++L RLY++++QN  +L  L     D       + +E + +  A+RA RC+Y+A+
Sbjct: 367 KITKPEELVRLYDLLIQNTTDLTDLISSGRDKNKEENTFIQEYELKSLAFRAERCFYLAK 426

Query: 245 VLTGLRRFREALAMLERCNTYT 180
             +   +  E+ A+     + T
Sbjct: 427 SYSSAGKRAESYALFCHARSIT 448


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,115,306
Number of Sequences: 37544
Number of extensions: 154575
Number of successful extensions: 389
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)