Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11n02r
(447 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18181| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 4e-06
SB_57268| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_51808| Best HMM Match : OmpA (HMM E-Value=0.72) 28 4.0
SB_46519| Best HMM Match : DUF720 (HMM E-Value=0.49) 28 4.0
SB_44158| Best HMM Match : OmpA (HMM E-Value=0.72) 28 4.0
SB_14913| Best HMM Match : DUF720 (HMM E-Value=0.47) 28 4.0
SB_36695| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_16760| Best HMM Match : OmpA (HMM E-Value=0.72) 28 4.0
SB_12817| Best HMM Match : HTH_psq (HMM E-Value=7.1) 28 4.0
SB_44890| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.3
SB_15135| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39) 27 7.1
SB_39978| Best HMM Match : 7tm_1 (HMM E-Value=8.54792e-44) 27 7.1
SB_28642| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39) 27 7.1
SB_50411| Best HMM Match : zf-C2H2 (HMM E-Value=1.3e-08) 27 9.3
SB_44967| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_6823| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
>SB_18181| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 503
Score = 48.0 bits (109), Expect = 4e-06
Identities = 22/59 (37%), Positives = 36/59 (61%)
Frame = -2
Query: 410 KKVRPQDLTRLYEIILQNYNELQQLPGFENDAVYQKEIDTQMKAYRAFRCYYIAQVLTG 234
K +P+D+ R+Y+IILQN +++ +L E+D KEI Q Y+A+ YY ++ G
Sbjct: 289 KLTKPEDMVRIYDIILQNLSDMSELHSVEDDLELTKEIAAQTLEYKAY-SYYDGFIVDG 346
>SB_57268| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 912
Score = 27.9 bits (59), Expect = 4.0
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -2
Query: 308 QKEIDTQMKAYRAFRCYYIAQVLTGLRRFREALAMLERCNT 186
++ ++ QMK RCY Q + G R R AL+ E NT
Sbjct: 224 KENVENQMKETAFLRCYGSGQSIRGWERGRRALS-FEPANT 263
>SB_51808| Best HMM Match : OmpA (HMM E-Value=0.72)
Length = 516
Score = 27.9 bits (59), Expect = 4.0
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -2
Query: 308 QKEIDTQMKAYRAFRCYYIAQVLTGLRRFREALAMLERCNT 186
++ ++ QMK RCY Q + G R R AL+ E NT
Sbjct: 231 KENVENQMKETAFLRCYGSGQSIRGWERGRRALS-FEPANT 270
>SB_46519| Best HMM Match : DUF720 (HMM E-Value=0.49)
Length = 1205
Score = 27.9 bits (59), Expect = 4.0
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -2
Query: 308 QKEIDTQMKAYRAFRCYYIAQVLTGLRRFREALAMLERCNT 186
++ ++ QMK RCY Q + G R R AL+ E NT
Sbjct: 149 KENVENQMKETAFLRCYGSGQSIRGWERGRRALS-FEPANT 188
>SB_44158| Best HMM Match : OmpA (HMM E-Value=0.72)
Length = 406
Score = 27.9 bits (59), Expect = 4.0
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -2
Query: 308 QKEIDTQMKAYRAFRCYYIAQVLTGLRRFREALAMLERCNT 186
++ ++ QMK RCY Q + G R R AL+ E NT
Sbjct: 225 KENVENQMKETAFLRCYGSGQSIRGWERGRRALS-FEPANT 264
>SB_14913| Best HMM Match : DUF720 (HMM E-Value=0.47)
Length = 528
Score = 27.9 bits (59), Expect = 4.0
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -2
Query: 308 QKEIDTQMKAYRAFRCYYIAQVLTGLRRFREALAMLERCNT 186
++ ++ QMK RCY Q + G R R AL+ E NT
Sbjct: 73 KENVENQMKETAFLRCYGSGQSIRGWERGRRALS-FEPANT 112
>SB_36695| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 412
Score = 27.9 bits (59), Expect = 4.0
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -2
Query: 308 QKEIDTQMKAYRAFRCYYIAQVLTGLRRFREALAMLERCNT 186
++ ++ QMK RCY Q + G R R AL+ E NT
Sbjct: 231 KENVENQMKETAFLRCYGSGQSIRGWERGRRALS-FEPANT 270
>SB_16760| Best HMM Match : OmpA (HMM E-Value=0.72)
Length = 933
Score = 27.9 bits (59), Expect = 4.0
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -2
Query: 308 QKEIDTQMKAYRAFRCYYIAQVLTGLRRFREALAMLERCNT 186
++ ++ QMK RCY Q + G R R AL+ E NT
Sbjct: 231 KENVENQMKETAFLRCYGSGQSIRGWERGRRALS-FEPANT 270
>SB_12817| Best HMM Match : HTH_psq (HMM E-Value=7.1)
Length = 174
Score = 27.9 bits (59), Expect = 4.0
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -2
Query: 308 QKEIDTQMKAYRAFRCYYIAQVLTGLRRFREALAMLERCNT 186
++ ++ QMK RCY Q + G R R AL+ E NT
Sbjct: 61 KENVENQMKETAFLRCYGSGQSIRGWERGRRALS-FEPANT 100
>SB_44890| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1109
Score = 27.5 bits (58), Expect = 5.3
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 299 FPFDKLRRSQSPATVAVHCNSAE*SRRAWSSLEAG 403
F F RS+SP++ VH RR+W +L AG
Sbjct: 396 FRFTPEMRSRSPSSFPVHHGLLGCLRRSWRALAAG 430
>SB_15135| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39)
Length = 794
Score = 27.1 bits (57), Expect = 7.1
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = -2
Query: 317 AVYQKEIDTQMKAYRAFRCYYIAQVLTGLRRFREALAMLE 198
AV+Q IDT +K CY ++TG R RE A LE
Sbjct: 692 AVFQSTIDTILKGIDGVVCYIDDILITG-RNDREHKARLE 730
>SB_39978| Best HMM Match : 7tm_1 (HMM E-Value=8.54792e-44)
Length = 429
Score = 27.1 bits (57), Expect = 7.1
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +3
Query: 249 SDVIATERAIRLHLRID-FLLINCVVLKARQLLQFIVILQNDL 374
+D + IR+ + FLLINC+ L L+ F++I N L
Sbjct: 74 ADELLNRTPIRIGIETTVFLLINCLSLFGNILICFVIIQTNGL 116
>SB_28642| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39)
Length = 1750
Score = 27.1 bits (57), Expect = 7.1
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = -2
Query: 317 AVYQKEIDTQMKAYRAFRCYYIAQVLTGLRRFREALAMLE 198
AV+Q IDT +K CY ++TG R RE A LE
Sbjct: 535 AVFQSTIDTILKGIDGVVCYIDDILITG-RNDREHKARLE 573
>SB_50411| Best HMM Match : zf-C2H2 (HMM E-Value=1.3e-08)
Length = 108
Score = 26.6 bits (56), Expect = 9.3
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 248 ERCNSNGTRDTPSFAYRFPFDKLRRSQSPATVAVHC 355
ERC + R R + L+R QSPA +A++C
Sbjct: 69 ERCQKSFNRK--DILKRHEKNTLKRKQSPAVIAINC 102
>SB_44967| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1284
Score = 26.6 bits (56), Expect = 9.3
Identities = 20/56 (35%), Positives = 27/56 (48%)
Frame = -2
Query: 365 LQNYNELQQLPGFENDAVYQKEIDTQMKAYRAFRCYYIAQVLTGLRRFREALAMLE 198
L YN L + AV+Q IDT +K CY ++TG R +E A+LE
Sbjct: 565 LYQYNRLPFVVA-SAPAVFQSTIDTILKGIDGVVCYIDDILITG-RNDQEHKAILE 618
>SB_6823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 287
Score = 26.6 bits (56), Expect = 9.3
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +3
Query: 252 DVIATERAIRLHLRIDFLLINCVVLKARQLLQFIVILQNDLVEPGQVLRPD 404
D+I T RA++ I+ L+N VV K + + + I I + P + L+ D
Sbjct: 183 DLIMTGRAVKAQEAIEIGLVNRVVPKGKAIEEAIKIAEKISRFPQESLKAD 233
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,840,049
Number of Sequences: 59808
Number of extensions: 190222
Number of successful extensions: 468
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 883875528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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