Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11n02r
(447 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC020238-1|AAH20238.1| 596|Homo sapiens SRP68 protein protein. 80 4e-15
AK074698-1|BAC11145.1| 627|Homo sapiens protein ( Homo sapiens ... 80 4e-15
AK027322-1|BAB55041.1| 335|Homo sapiens protein ( Homo sapiens ... 80 4e-15
AK027320-1|BAB55040.1| 327|Homo sapiens protein ( Homo sapiens ... 80 4e-15
AF195951-1|AAF24308.1| 619|Homo sapiens signal recognition part... 80 4e-15
AL031847-8|CAI19444.2| 634|Homo sapiens ring finger protein 207... 29 5.5
AK127700-1|BAC87091.1| 243|Homo sapiens protein ( Homo sapiens ... 29 5.5
>BC020238-1|AAH20238.1| 596|Homo sapiens SRP68 protein protein.
Length = 596
Score = 79.8 bits (188), Expect = 4e-15
Identities = 37/76 (48%), Positives = 51/76 (67%)
Frame = -2
Query: 401 RPQDLTRLYEIILQNYNELQQLPGFENDAVYQKEIDTQMKAYRAFRCYYIAQVLTGLRRF 222
RPQDL RLY+IILQN EL QLPG E D +QKEI + ++A+RC++IAQ ++++
Sbjct: 389 RPQDLIRLYDIILQNLVELLQLPGLEEDKAFQKEIGLKTLVFKAYRCFFIAQSYVLVKKW 448
Query: 221 REALAMLERCNTYTVE 174
EAL + +R Y E
Sbjct: 449 SEALVLYDRVLKYANE 464
>AK074698-1|BAC11145.1| 627|Homo sapiens protein ( Homo sapiens
cDNA FLJ90217 fis, clone MAMMA1002234, highly similar to
SIGNAL RECOGNITION PARTICLE 68 KD PROTEIN. ).
Length = 627
Score = 79.8 bits (188), Expect = 4e-15
Identities = 37/76 (48%), Positives = 51/76 (67%)
Frame = -2
Query: 401 RPQDLTRLYEIILQNYNELQQLPGFENDAVYQKEIDTQMKAYRAFRCYYIAQVLTGLRRF 222
RPQDL RLY+IILQN EL QLPG E D +QKEI + ++A+RC++IAQ ++++
Sbjct: 420 RPQDLIRLYDIILQNLVELLQLPGLEEDKAFQKEIGLKTLVFKAYRCFFIAQSYVLVKKW 479
Query: 221 REALAMLERCNTYTVE 174
EAL + +R Y E
Sbjct: 480 SEALVLYDRVLKYANE 495
>AK027322-1|BAB55041.1| 335|Homo sapiens protein ( Homo sapiens
cDNA FLJ14416 fis, clone HEMBA1005202, highly similar to
SIGNAL RECOGNITION PARTICLE 68 KD PROTEIN. ).
Length = 335
Score = 79.8 bits (188), Expect = 4e-15
Identities = 37/76 (48%), Positives = 51/76 (67%)
Frame = -2
Query: 401 RPQDLTRLYEIILQNYNELQQLPGFENDAVYQKEIDTQMKAYRAFRCYYIAQVLTGLRRF 222
RPQDL RLY+IILQN EL QLPG E D +QKEI + ++A+RC++IAQ ++++
Sbjct: 128 RPQDLIRLYDIILQNLVELLQLPGLEEDKAFQKEIGLKTLVFKAYRCFFIAQSYVLVKKW 187
Query: 221 REALAMLERCNTYTVE 174
EAL + +R Y E
Sbjct: 188 SEALVLYDRVLKYANE 203
>AK027320-1|BAB55040.1| 327|Homo sapiens protein ( Homo sapiens
cDNA FLJ14414 fis, clone HEMBA1004847, highly similar to
SIGNAL RECOGNITION PARTICLE 68 KD PROTEIN. ).
Length = 327
Score = 79.8 bits (188), Expect = 4e-15
Identities = 37/76 (48%), Positives = 51/76 (67%)
Frame = -2
Query: 401 RPQDLTRLYEIILQNYNELQQLPGFENDAVYQKEIDTQMKAYRAFRCYYIAQVLTGLRRF 222
RPQDL RLY+IILQN EL QLPG E D +QKEI + ++A+RC++IAQ ++++
Sbjct: 160 RPQDLIRLYDIILQNLVELLQLPGLEEDKAFQKEIGLKTLVFKAYRCFFIAQSYVLVKKW 219
Query: 221 REALAMLERCNTYTVE 174
EAL + +R Y E
Sbjct: 220 SEALVLYDRVLKYANE 235
>AF195951-1|AAF24308.1| 619|Homo sapiens signal recognition
particle 68 protein.
Length = 619
Score = 79.8 bits (188), Expect = 4e-15
Identities = 37/76 (48%), Positives = 51/76 (67%)
Frame = -2
Query: 401 RPQDLTRLYEIILQNYNELQQLPGFENDAVYQKEIDTQMKAYRAFRCYYIAQVLTGLRRF 222
RPQDL RLY+IILQN EL QLPG E D +QKEI + ++A+RC++IAQ ++++
Sbjct: 412 RPQDLIRLYDIILQNLVELLQLPGLEEDKAFQKEIGLKTLVFKAYRCFFIAQSYVLVKKW 471
Query: 221 REALAMLERCNTYTVE 174
EAL + +R Y E
Sbjct: 472 SEALVLYDRVLKYANE 487
>AL031847-8|CAI19444.2| 634|Homo sapiens ring finger protein 207
protein.
Length = 634
Score = 29.5 bits (63), Expect = 5.5
Identities = 20/69 (28%), Positives = 33/69 (47%)
Frame = -1
Query: 420 DRRKESPASRLDQALRDHSAELQ*TATVAGL*ERRSLSKGNRYANEGVSRVPLLLHRSSA 241
D + ES + D + + ++ +V E+ S KGN +A G+S PLL +
Sbjct: 557 DEQSESLQNTHDDSRNNAASARNNPGSVPEKREKTSEPKGNSWAPNGLSEEPLLKNMDH- 615
Query: 240 HRTETLQGG 214
HR++ GG
Sbjct: 616 HRSKQKNGG 624
>AK127700-1|BAC87091.1| 243|Homo sapiens protein ( Homo sapiens
cDNA FLJ45800 fis, clone NT2RI2028537. ).
Length = 243
Score = 29.5 bits (63), Expect = 5.5
Identities = 20/69 (28%), Positives = 33/69 (47%)
Frame = -1
Query: 420 DRRKESPASRLDQALRDHSAELQ*TATVAGL*ERRSLSKGNRYANEGVSRVPLLLHRSSA 241
D + ES + D + + ++ +V E+ S KGN +A G+S PLL +
Sbjct: 166 DEQSESLQNTHDDSRNNAASARNNPGSVPEKREKTSEPKGNSWAPNGLSEEPLLKNMDH- 224
Query: 240 HRTETLQGG 214
HR++ GG
Sbjct: 225 HRSKQKNGG 233
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,955,368
Number of Sequences: 237096
Number of extensions: 819832
Number of successful extensions: 1662
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1662
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3644351872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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