Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n02r
         (447 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY058698-1|AAL13927.1|  604|Drosophila melanogaster LD41750p pro...   107   7e-24
AE014296-1556|AAF50341.1|  604|Drosophila melanogaster CG5064-PA...   107   7e-24

>AY058698-1|AAL13927.1|  604|Drosophila melanogaster LD41750p
           protein.
          Length = 604

 Score =  107 bits (257), Expect = 7e-24
 Identities = 52/116 (44%), Positives = 70/116 (60%), Gaps = 1/116 (0%)
 Frame = -2

Query: 413 GKKVRPQDLTRLYEIILQNYNELQQLPGFENDAVYQKEIDTQMKAYRAFRCYYIAQVLTG 234
           GK+VRPQDL RLYEIILQN  E+QQ+ G E+DA YQ E++     ++AFRCYYIA  L  
Sbjct: 389 GKRVRPQDLARLYEIILQNVTEMQQINGLEDDATYQSEVENLAITFKAFRCYYIALTLID 448

Query: 233 LRRFREALAMLERCNTYTVES-XXXXXXXXXXXXXXXXXXXDIESCKFEVHADSVL 69
           +++++EA+A+ ER + Y  E+                     I+ CKF  HA SVL
Sbjct: 449 IKKWKEAVALYERASNYATEALKGKSSPEFQLQEELKKVVSAIDGCKFSAHAYSVL 504


>AE014296-1556|AAF50341.1|  604|Drosophila melanogaster CG5064-PA
           protein.
          Length = 604

 Score =  107 bits (257), Expect = 7e-24
 Identities = 52/116 (44%), Positives = 70/116 (60%), Gaps = 1/116 (0%)
 Frame = -2

Query: 413 GKKVRPQDLTRLYEIILQNYNELQQLPGFENDAVYQKEIDTQMKAYRAFRCYYIAQVLTG 234
           GK+VRPQDL RLYEIILQN  E+QQ+ G E+DA YQ E++     ++AFRCYYIA  L  
Sbjct: 389 GKRVRPQDLARLYEIILQNVTEMQQINGLEDDATYQSEVENLAITFKAFRCYYIALTLID 448

Query: 233 LRRFREALAMLERCNTYTVES-XXXXXXXXXXXXXXXXXXXDIESCKFEVHADSVL 69
           +++++EA+A+ ER + Y  E+                     I+ CKF  HA SVL
Sbjct: 449 IKKWKEAVALYERASNYATEALKGKSSPEFQLQEELKKVVSAIDGCKFSAHAYSVL 504


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,485,781
Number of Sequences: 53049
Number of extensions: 262003
Number of successful extensions: 759
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1435027293
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)