Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n02r
         (447 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    27   0.12 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    24   0.87 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    24   0.87 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   0.87 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   1.2  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   1.2  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   4.6  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   4.6  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 26.6 bits (56), Expect = 0.12
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -2

Query: 392 DLTRLYEIILQNYNELQQLPGFENDAVYQK 303
           D  RLY+ +L NYN L +     ND V  K
Sbjct: 20  DAKRLYDDLLSNYNRLIRPVSNNNDTVVVK 49


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 0.87
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 392 DLTRLYEIILQNYNEL 345
           D  RLY+ +L NYN+L
Sbjct: 28  DAKRLYDDLLSNYNKL 43


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 0.87
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 392 DLTRLYEIILQNYNEL 345
           D  RLY+ +L NYN+L
Sbjct: 28  DAKRLYDDLLSNYNKL 43


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.8 bits (49), Expect = 0.87
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 392 DLTRLYEIILQNYNEL 345
           D  RLY+ +L NYN+L
Sbjct: 24  DAKRLYDDLLSNYNKL 39


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 383 RLYEIILQNYNELQQLPGFENDAVYQK 303
           RLY+ +L NYN L +  G  +D +  K
Sbjct: 23  RLYDDLLSNYNRLIRPVGNNSDRLTVK 49


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 392 DLTRLYEIILQNYNEL 345
           D  RLY+ +L NYN L
Sbjct: 33  DTKRLYDDLLSNYNRL 48


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +2

Query: 293 YRFPFDKLRRSQSPATVAVHCNSAE 367
           YRFP ++ + S    T+AV     E
Sbjct: 166 YRFPQNQFKESSLFVTIAVDVRDTE 190


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 153 QSTTKGQVASLEEGH 109
           +ST  G+VASL E H
Sbjct: 497 ESTCSGEVASLTEYH 511


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,620
Number of Sequences: 438
Number of extensions: 1550
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11697255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)