Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n02r
         (447 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61970.1 68418.m07778 signal recognition particle-related / S...    46   1e-05
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu...    29   1.1  
At3g49830.1 68416.m05448 DNA helicase-related similar to DNA hel...    27   4.4  
At1g10230.1 68414.m01153 E3 ubiquitin ligase SCF complex subunit...    27   4.4  
At1g06490.1 68414.m00688 glycosyl transferase family 48 protein ...    27   5.8  

>At5g61970.1 68418.m07778 signal recognition particle-related /
           SRP-related low similarity to Signal recognition
           particle 68 kDa protein (SRP68) from Homo sapiens
           SP|Q9UHB9, Canis familiaris SP|Q00004
          Length = 605

 Score = 46.0 bits (104), Expect = 1e-05
 Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
 Frame = -2

Query: 410 KKVRPQDLTRLYEIILQNYNELQQLPGFEND-----AVYQKEIDTQMKAYRAFRCYYIAQ 246
           K  RP++L RLY+++LQN  +L  L     D       +++E      A+RA RC+Y+A+
Sbjct: 383 KVTRPEELVRLYDLLLQNVADLSDLISSGRDRKPEEIAFEEECQRTSLAFRAERCFYLAK 442

Query: 245 VLTGLRRFREALAMLERCNT 186
             +   +  EA A+  R  +
Sbjct: 443 SYSLAGKRAEAFALYSRARS 462


>At1g79280.1 68414.m09242 expressed protein weak similarity to
            Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
          Length = 2111

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -1

Query: 348  TATVAGL*ERRSLSKGNRYANEGVSRVPLLLHRSSAHRTETLQGG 214
            ++T+  L +R  + +  R AN  VSR P    R +  RT  L+GG
Sbjct: 2045 SSTIVTLADRAQMKRRERIANIVVSRAPNPATRGARGRTVNLRGG 2089


>At3g49830.1 68416.m05448 DNA helicase-related similar to DNA
           helicase GI:4521249 from [Mus musculus]
          Length = 473

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -2

Query: 413 GKKVRPQDLTRLYEIILQNYNELQQLPGFENDAVYQKEIDTQMKA 279
           GK V  QD+ R+Y + L     +Q L   E++ ++   I    +A
Sbjct: 416 GKVVEIQDIERVYRLFLDTKRSMQYLVEHESEYLFSVPIKNTQEA 460


>At1g10230.1 68414.m01153 E3 ubiquitin ligase SCF complex subunit
           SKP1/ASK1 (At18), putative E3 ubiquitin ligase; similar
           to Skp1 homolog Skp1a GI:3068807 [Arabidopsis thaliana]
          Length = 183

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -2

Query: 446 EEARKNNIQIXGKKVRPQDLTRLYEIIL-QNYNELQQLPGFENDAV 312
           EEA+KN      K +   DL  +++IIL  NY   + L GF +  V
Sbjct: 98  EEAKKNLDSWDAKFMEKLDLETIFKIILAANYLNFEGLLGFASQTV 143


>At1g06490.1 68414.m00688 glycosyl transferase family 48 protein
           contains Pfam profile: PF02364 1,3-beta-glucan synthase
          Length = 1933

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 7/89 (7%)
 Frame = -2

Query: 434 KNNIQIXGKKVRPQDLTRLYEIILQNYNELQQ-LPGFEND---AVYQKEIDTQMKAYRAF 267
           +NNIQ    K  P+++ +LY+I    Y+ L+  +P    D     Y KE++ + + Y  +
Sbjct: 138 ENNIQDGEGKKTPEEMAKLYQIATVLYDVLKTVVPQARIDDKTLRYAKEVERKKEQYEHY 197

Query: 266 RC--YYIAQVLTGLRRFRE-ALAMLERCN 189
                Y     T +    E   A+L  CN
Sbjct: 198 NILPLYALGAKTAVMELPEIKAAILAVCN 226


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,364,862
Number of Sequences: 28952
Number of extensions: 123502
Number of successful extensions: 354
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 722638680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)