Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n02f
         (541 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        22   3.0  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   5.2  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    21   6.9  

>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 131 VENSDKKNEKAPILLNL 181
           VE SDK+    P LLN+
Sbjct: 368 VEESDKQRTHQPFLLNI 384


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +1

Query: 166 HPPQLRNISDNKRQSAAAWSPTC*LSEI 249
           +PP  + ++D+   S A  +PT  ++E+
Sbjct: 295 YPPLAQGVNDDAFNSVATPTPTSVMTEL 322


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 10/27 (37%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +2

Query: 95  QESEIENGKVTAVENSDK-KNEKAPIL 172
           ++ + ++ +  +VE S K KN+ APIL
Sbjct: 125 RQQQKQHNQQQSVEKSSKLKNKSAPIL 151


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,342
Number of Sequences: 336
Number of extensions: 2582
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13201902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)