Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n02f
         (541 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    30   0.19 
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    28   1.0  
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    27   2.3  
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    26   4.1  
SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting...    25   7.2  
SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   9.5  
SPBC16D10.01c ||SPBC418.03c|conserved fungal protein|Schizosacch...    25   9.5  

>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 30.3 bits (65), Expect = 0.19
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 490 QSRHKMKLFSRFSVSFLTQLHGMSPCPLGL 401
           +SRH+  L     + F  ++HGM PC  GL
Sbjct: 46  ESRHESDLIKSILLPFHNRIHGMLPCKQGL 75


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +2

Query: 101  SEIENGKVTAVENSDKKNE-KAPILLNLEIFRITRDSQQQHGLRHAD 238
            +E+ + +    ++ +K+N+ K  +LL  E  R TR+  ++  LRHAD
Sbjct: 1025 NELSSHRNAEKQHLEKENDYKQQLLLVTEDLRKTREDYEKELLRHAD 1071


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 11/74 (14%), Positives = 35/74 (47%)
 Frame = -1

Query: 328 TVMASVSLWYFEYFSQSSYAARTIATISLIISMSETMLLLTVSCYPKYF*VEEDGCLLIF 149
           T+ +   LW+F +   +   +     ++   ++ ++    +VSC+   +  + +   ++F
Sbjct: 116 TLSSLPPLWFFSFLYYTDIGSTFFVLLAYDFALRKSAFSSSVSCFFSLWFRQTNIVWMVF 175

Query: 148 LIRIFYRCHLSIFN 107
           +   ++  ++S FN
Sbjct: 176 IAVTYFASNMSFFN 189


>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 14/60 (23%), Positives = 30/60 (50%)
 Frame = +2

Query: 14  VFNLIXDKKNCFKYIT*TLVVHINMVGQESEIENGKVTAVENSDKKNEKAPILLNLEIFR 193
           V+  +  K  C++ +  TL+   +++  E  I+N   +A++ +    E++ IL   E  R
Sbjct: 21  VYQALLKKSTCYQEVAATLISKCSLLNTELTIDNRIHSAIQMTLCDFERSQILAPSECVR 80


>SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting
           complex subunit Apc4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 719

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = -1

Query: 403 LQQRYVQQSILGIVGRKVGSCDITTTVMASVSLWYFEYFSQSSY 272
           L  + +  S + I+G+    C +    +A V L +FE+  ++SY
Sbjct: 620 LDMKLLNGSSILILGKLKEKCFLCEICLADVPLTFFEHQQKNSY 663


>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 471

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 1/95 (1%)
 Frame = -1

Query: 466 FSRFSVSFLTQLHGMSPCPLGLQQRYVQQSILGIVGRKVGSCDITTTVMASVSLWYF-EY 290
           +S F       L G+   PL L   Y+ + +       +G C     ++  +++ Y  + 
Sbjct: 314 YSSFQAGNFLSLAGIINVPLLLIFSYLTRYLTDRDIILLGCCLNIVCMVIHITIHYTGKE 373

Query: 289 FSQSSYAARTIATISLIISMSETMLLLTVSCYPKY 185
           F Q  +   T+      I+ S ++ LLT   +PKY
Sbjct: 374 FVQPYFIIYTLVFFGSSIANSPSVSLLTKVLHPKY 408


>SPBC16D10.01c ||SPBC418.03c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +3

Query: 276 EDCEKYSKYHRETDAITVVVMSQLPTLRPTMPRID 380
           E+CE Y+K   + DA     +  L ++R +  +I+
Sbjct: 145 ENCELYTKLALQIDATNAEALQTLASMRISQQKIE 179


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,137,263
Number of Sequences: 5004
Number of extensions: 40840
Number of successful extensions: 122
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)