Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n02f
         (541 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0195 - 14098865-14099083,14100209-14100352,14101820-141018...    35   0.048
02_05_1041 - 33713561-33714564,33714844-33714904,33715640-337159...    29   2.4  
06_01_0474 - 3362734-3362827,3363179-3363366,3363458-3363700,336...    28   4.1  
05_01_0460 - 3644229-3644420,3644623-3644865,3644959-3645237,364...    28   4.1  
11_01_0071 + 565349-565814,566626-566692,567255-567288,567747-56...    27   7.2  
03_02_0910 + 12317493-12317960,12319678-12319734,12320592-123206...    27   9.6  

>08_02_0195 -
           14098865-14099083,14100209-14100352,14101820-14101833,
           14101919-14102006,14102303-14102426,14102959-14103068,
           14103142-14103348,14103441-14103568,14103781-14103892,
           14105678-14105695,14105917-14106109,14106274-14106359,
           14106494-14106582,14106817-14106863,14107424-14107534,
           14110252-14110318,14110419-14110509
          Length = 615

 Score = 34.7 bits (76), Expect = 0.048
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 155 EKAPILLNLEIFRITRDSQQQHGLRHADY 241
           EK  +  ++ +  + R++Q QHGLRH DY
Sbjct: 21  EKPLVRFSINVLELMREAQMQHGLRHGDY 49


>02_05_1041 -
           33713561-33714564,33714844-33714904,33715640-33715951,
           33716780-33716917
          Length = 504

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
 Frame = -1

Query: 541 AFLTKLQKHLPMCTCFLQSRHKMKLFSRFSVSFLTQLHGMSP-CPLGLQQRYVQQSILGI 365
           +FLT   +++ MC  FLQ R +     R S   +  +  +    P   QQ  V  SIL  
Sbjct: 140 SFLTPTSENMSMCKFFLQQRCRFGSNCRLSHGIVIPILSLKQFTPTRWQQSLVGSSILAA 199

Query: 364 VGRKVG 347
            G   G
Sbjct: 200 SGHHSG 205


>06_01_0474 - 3362734-3362827,3363179-3363366,3363458-3363700,
            3363820-3364098,3364189-3364386,3364475-3365110,
            3365209-3365463,3365579-3365685,3365770-3369566,
            3369677-3370166,3370918-3371308,3371481-3371573,
            3371687-3371810,3372544-3372791
          Length = 2380

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 12/67 (17%)
 Frame = +2

Query: 302  PQGDRRHYRRRDVTTTHLTA--XNAENRLL-----YI-----PLLQAERAWAHAMQLRQE 445
            PQ D R+ ++ DV  TH  +   + E++L+     YI       + ++R WA     RQE
Sbjct: 1351 PQSDLRYSKQTDVGVTHFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQE 1410

Query: 446  ANTEPRK 466
            A ++ R+
Sbjct: 1411 AQSQNRR 1417


>05_01_0460 - 3644229-3644420,3644623-3644865,3644959-3645237,
            3645328-3645525,3645614-3646249,3646352-3646606,
            3646718-3646824,3646909-3650705,3650816-3651305,
            3652043-3652433,3652621-3652713,3652818-3652941,
            3653871-3654118
          Length = 2350

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 12/67 (17%)
 Frame = +2

Query: 302  PQGDRRHYRRRDVTTTHLTA--XNAENRLL-----YI-----PLLQAERAWAHAMQLRQE 445
            PQ D R+ ++ DV  TH  +   + E++L+     YI       + ++R WA     RQE
Sbjct: 1351 PQSDLRYSKQTDVGVTHFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQE 1410

Query: 446  ANTEPRK 466
            A ++ R+
Sbjct: 1411 AQSQNRR 1417


>11_01_0071 +
           565349-565814,566626-566692,567255-567288,567747-567860
          Length = 226

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +1

Query: 163 THPPQLRNISDN-KRQSAAAWSPTC*LSEISWLLFAPHKKTAKSTQNTTGRQTPLPS 330
           T PP  R+ S   KRQ +AA  P   L +++ LL       +  T  TTGR  PLPS
Sbjct: 9   TPPPSERHRSPKVKRQRSAAAQP---LGDVTNLLLP-----STPTNPTTGRPRPLPS 57


>03_02_0910 +
           12317493-12317960,12319678-12319734,12320592-12320666,
           12321219-12321299,12321472-12321546,12321818-12321862,
           12321975-12322064,12322153-12322254,12322366-12322420,
           12324966-12325027,12325521-12325555,12325877-12326115,
           12326219-12328035
          Length = 1066

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +3

Query: 297 KYHRETDAITVVVMSQLPTLRPTMPRIDCCTYRCCKP 407
           +Y R   A +     Q+ T+R      DCC Y  C+P
Sbjct: 791 RYRRRRRAYSCCHSDQMETMRRPCSH-DCCHYHSCRP 826


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,160,295
Number of Sequences: 37544
Number of extensions: 275173
Number of successful extensions: 662
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)