Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n02f
         (541 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18181| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   4e-06
SB_8254| Best HMM Match : zf-C2H2 (HMM E-Value=0)                      33   0.20 
SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29)                  28   5.6  
SB_9953| Best HMM Match : VWA (HMM E-Value=0)                          28   5.6  
SB_43380| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_47051| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  
SB_26957| Best HMM Match : PDZ (HMM E-Value=0)                         27   9.8  
SB_14614| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  

>SB_18181| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 503

 Score = 48.4 bits (110), Expect = 4e-06
 Identities = 21/36 (58%), Positives = 27/36 (75%)
 Frame = +2

Query: 428 MQLRQEANTEPRKKFHLVSRLKKACAHGQMLLQLCE 535
           M+L+  ANTEPRK+FHL+ RL+KA  H Q L  LC+
Sbjct: 1   MELKLLANTEPRKRFHLIRRLQKASKHAQDLENLCD 36


>SB_8254| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 684

 Score = 32.7 bits (71), Expect = 0.20
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
 Frame = +2

Query: 317 RHYRRRDVTTTHLTAXNAENRLLYIPLLQ--AERAWAHAMQ-LRQEANTEPRKKFHLVSR 487
           +H +   + T+H+ A NA  RLL IP L+  A R   H  + LR  +  +P         
Sbjct: 470 QHAKHTILNTSHINARNATRRLLIIPFLKSTAFRTRGHLNEHLRIHSGEKPFSCDQCGKA 529

Query: 488 LKKAC 502
            KKAC
Sbjct: 530 FKKAC 534


>SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29)
          Length = 2072

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 98  ESEIENGKVTAVENSDKKNEKAPILLNLEIFRITRDSQQQHG 223
           E ++EN +    E+ DK+ +K   L+  EI  +    QQ+ G
Sbjct: 812 EQQLENTRAKLRESYDKREDKMEDLMESEITELREKHQQELG 853


>SB_9953| Best HMM Match : VWA (HMM E-Value=0)
          Length = 1034

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 336 MSQLPTLRPTMPRIDCCTYRC 398
           M+QLPTL   +    C TY+C
Sbjct: 63  MAQLPTLLTAISEASCATYKC 83


>SB_43380| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 509

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 5/101 (4%)
 Frame = -1

Query: 469 LFSRFSVSFLTQLHGMSPCPLGLQQRYVQQSILGIVGRKVGSCDITTTVMASVSLWYFEY 290
           + S  SV FL   + ++   +   +RY       +VG  +G+        A + +W    
Sbjct: 269 VLSLLSVFFLFAQYIVTTLGVLYGKRYPLCWSAELVGYFLGTLLCVKAFGAVLGIWLGSL 328

Query: 289 FSQSSYAARTIATISLI-----ISMSETMLLLTVSCYPKYF 182
              ++Y A  I T+ LI     I  S+T  L+ +SC    F
Sbjct: 329 MKLTNYTAAQIGTLFLIAGLTMIGFSQTTFLMFMSCVANLF 369


>SB_47051| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 673

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 390 YRCCKPRGHGLMPCNCVR 443
           + C + R HG  PC+CVR
Sbjct: 436 FPCDRVRSHGNSPCDCVR 453


>SB_26957| Best HMM Match : PDZ (HMM E-Value=0)
          Length = 1685

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +1

Query: 277 KTAKSTQNTTGRQTPLPSS*CHNYPPYGXQCRE*IAVHTAAASRE 411
           +T  ST ++ GRQTP  S    +  P   Q  + IAV +A A  E
Sbjct: 723 ETPHSTPHSPGRQTPQSSHSPRSVTPVVIQPEKSIAVESADAKAE 767


>SB_14614| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 308

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = -1

Query: 304 WYFEYFSQSSYAART---IATISLIISMSETMLLLTVSCY 194
           +Y+ Y+  SS  ART   I  + L+++++E  + L  S Y
Sbjct: 115 YYYYYYKYSSQTARTSIGICVVLLLLALTEFFVALASSIY 154


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,492,518
Number of Sequences: 59808
Number of extensions: 323612
Number of successful extensions: 790
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)