Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11n02f
(541 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC020238-1|AAH20238.1| 596|Homo sapiens SRP68 protein protein. 116 5e-26
AK074698-1|BAC11145.1| 627|Homo sapiens protein ( Homo sapiens ... 116 5e-26
AF195951-1|AAF24308.1| 619|Homo sapiens signal recognition part... 114 2e-25
DQ338460-1|ABC69298.1| 494|Homo sapiens putative RhoGAP protein... 31 3.4
BC114490-1|AAI14491.1| 494|Homo sapiens Rho GTPase activating p... 31 3.4
BC113888-1|AAI13889.1| 465|Homo sapiens ARHGAP19 protein protein. 31 3.4
AY336750-1|AAR02412.1| 517|Homo sapiens putative RhoGAP protein... 31 3.4
AL359385-3|CAI13731.2| 494|Homo sapiens Rho GTPase activating p... 31 3.4
AL359385-1|CAI13728.1| 485|Homo sapiens Rho GTPase activating p... 31 3.4
AK093316-1|BAC04130.1| 313|Homo sapiens protein ( Homo sapiens ... 31 3.4
AK074122-1|BAB84948.1| 196|Homo sapiens FLJ00194 protein protein. 31 3.4
BC099639-1|AAH99639.3| 401|Homo sapiens heparan sulfate 6-O-sul... 29 7.9
BC099638-1|AAH99638.3| 401|Homo sapiens heparan sulfate 6-O-sul... 29 7.9
BC096240-1|AAH96240.3| 401|Homo sapiens heparan sulfate 6-O-sul... 29 7.9
BC096239-1|AAH96239.3| 401|Homo sapiens heparan sulfate 6-O-sul... 29 7.9
AC017079-2|AAY14736.1| 401|Homo sapiens unknown protein. 29 7.9
AB006179-1|BAA25760.1| 410|Homo sapiens heparan-sulfate 6-sulfo... 29 7.9
>BC020238-1|AAH20238.1| 596|Homo sapiens SRP68 protein protein.
Length = 596
Score = 116 bits (279), Expect = 5e-26
Identities = 64/150 (42%), Positives = 88/150 (58%)
Frame = +2
Query: 92 GQESEIENGKVTAVENSDKKNEKAPILLNLEIFRITRDSQQQHGLRHADYQXXXXXXXXX 271
G E EN + +A K N++ L+LEI +I ++SQQQHGLRH D+Q
Sbjct: 34 GGEENKENERPSA---GSKANKEFGDSLSLEILQIIKESQQQHGLRHGDFQRYRGYCSRR 90
Query: 272 XXXXXXXXXXPQGDRRHYRRRDVTTTHLTAXNAENRLLYIPLLQAERAWAHAMQLRQEAN 451
G+R + + VT LT +NR L + L+ AERAW++AMQL+QEAN
Sbjct: 91 QRRLRKTLNFKMGNRHKFTGKKVTEELLT----DNRYLLLVLMDAERAWSYAMQLKQEAN 146
Query: 452 TEPRKKFHLVSRLKKACAHGQMLLQLCEES 541
TEPRK+FHL+SRL+KA H + L +LCE +
Sbjct: 147 TEPRKRFHLLSRLRKAVKHAEELERLCESN 176
>AK074698-1|BAC11145.1| 627|Homo sapiens protein ( Homo sapiens
cDNA FLJ90217 fis, clone MAMMA1002234, highly similar to
SIGNAL RECOGNITION PARTICLE 68 KD PROTEIN. ).
Length = 627
Score = 116 bits (279), Expect = 5e-26
Identities = 64/150 (42%), Positives = 88/150 (58%)
Frame = +2
Query: 92 GQESEIENGKVTAVENSDKKNEKAPILLNLEIFRITRDSQQQHGLRHADYQXXXXXXXXX 271
G E EN + +A K N++ L+LEI +I ++SQQQHGLRH D+Q
Sbjct: 34 GGEENKENERPSA---GSKANKEFGDSLSLEILQIIKESQQQHGLRHGDFQRYRGYCSRR 90
Query: 272 XXXXXXXXXXPQGDRRHYRRRDVTTTHLTAXNAENRLLYIPLLQAERAWAHAMQLRQEAN 451
G+R + + VT LT +NR L + L+ AERAW++AMQL+QEAN
Sbjct: 91 QRRLRKTLNFKMGNRHKFTGKKVTEELLT----DNRYLLLVLMDAERAWSYAMQLKQEAN 146
Query: 452 TEPRKKFHLVSRLKKACAHGQMLLQLCEES 541
TEPRK+FHL+SRL+KA H + L +LCE +
Sbjct: 147 TEPRKRFHLLSRLRKAVKHAEELERLCESN 176
>AF195951-1|AAF24308.1| 619|Homo sapiens signal recognition
particle 68 protein.
Length = 619
Score = 114 bits (275), Expect = 2e-25
Identities = 63/150 (42%), Positives = 88/150 (58%)
Frame = +2
Query: 92 GQESEIENGKVTAVENSDKKNEKAPILLNLEIFRITRDSQQQHGLRHADYQXXXXXXXXX 271
G E EN + +A K N++ L+LEI +I ++SQQQHGLRH D+Q
Sbjct: 26 GGEENKENERPSA---GSKANKEFGDSLSLEILQIIKESQQQHGLRHGDFQRYRGYCSRR 82
Query: 272 XXXXXXXXXXPQGDRRHYRRRDVTTTHLTAXNAENRLLYIPLLQAERAWAHAMQLRQEAN 451
G+R + + VT LT +NR L + L+ AERAW++AMQL+QEAN
Sbjct: 83 QRRLRKTLNFKMGNRHKFTGKKVTEELLT----DNRYLLLVLMDAERAWSYAMQLKQEAN 138
Query: 452 TEPRKKFHLVSRLKKACAHGQMLLQLCEES 541
TEPRK+FHL+SRL+KA H + L +LC+ +
Sbjct: 139 TEPRKRFHLLSRLRKAVKHAEELERLCKSN 168
>DQ338460-1|ABC69298.1| 494|Homo sapiens putative RhoGAP protein
protein.
Length = 494
Score = 30.7 bits (66), Expect = 3.4
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -1
Query: 490 QSRHKMKLFSRFSVSFLTQLHGMSPCPLGLQQRYVQQSILGIVGRKV 350
+S K +L +F+ LTQ G P +Q+R +S G++ RKV
Sbjct: 385 ESAKKKQLIRQFNKQSLTQTPGREPSTSQVQKRARSRSFSGLIKRKV 431
>BC114490-1|AAI14491.1| 494|Homo sapiens Rho GTPase activating
protein 19 protein.
Length = 494
Score = 30.7 bits (66), Expect = 3.4
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -1
Query: 490 QSRHKMKLFSRFSVSFLTQLHGMSPCPLGLQQRYVQQSILGIVGRKV 350
+S K +L +F+ LTQ G P +Q+R +S G++ RKV
Sbjct: 385 ESAKKKQLIRQFNKQSLTQTPGREPSTSQVQKRARSRSFSGLIKRKV 431
>BC113888-1|AAI13889.1| 465|Homo sapiens ARHGAP19 protein protein.
Length = 465
Score = 30.7 bits (66), Expect = 3.4
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -1
Query: 490 QSRHKMKLFSRFSVSFLTQLHGMSPCPLGLQQRYVQQSILGIVGRKV 350
+S K +L +F+ LTQ G P +Q+R +S G++ RKV
Sbjct: 356 ESAKKKQLIRQFNKQSLTQTPGREPSTSQVQKRARSRSFSGLIKRKV 402
>AY336750-1|AAR02412.1| 517|Homo sapiens putative RhoGAP protein
protein.
Length = 517
Score = 30.7 bits (66), Expect = 3.4
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -1
Query: 490 QSRHKMKLFSRFSVSFLTQLHGMSPCPLGLQQRYVQQSILGIVGRKV 350
+S K +L +F+ LTQ G P +Q+R +S G++ RKV
Sbjct: 385 ESAKKKQLIRQFNKQSLTQTPGREPSTSQVQKRARSRSFSGLIKRKV 431
>AL359385-3|CAI13731.2| 494|Homo sapiens Rho GTPase activating
protein 19 protein.
Length = 494
Score = 30.7 bits (66), Expect = 3.4
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -1
Query: 490 QSRHKMKLFSRFSVSFLTQLHGMSPCPLGLQQRYVQQSILGIVGRKV 350
+S K +L +F+ LTQ G P +Q+R +S G++ RKV
Sbjct: 385 ESAKKKQLIRQFNKQSLTQTPGREPSTSQVQKRARSRSFSGLIKRKV 431
>AL359385-1|CAI13728.1| 485|Homo sapiens Rho GTPase activating
protein 19 protein.
Length = 485
Score = 30.7 bits (66), Expect = 3.4
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -1
Query: 490 QSRHKMKLFSRFSVSFLTQLHGMSPCPLGLQQRYVQQSILGIVGRKV 350
+S K +L +F+ LTQ G P +Q+R +S G++ RKV
Sbjct: 376 ESAKKKQLIRQFNKQSLTQTPGREPSTSQVQKRARSRSFSGLIKRKV 422
>AK093316-1|BAC04130.1| 313|Homo sapiens protein ( Homo sapiens
cDNA FLJ35997 fis, clone TESTI2015042, weakly similar to
RHO-GTPASE-ACTIVATING PROTEIN 1. ).
Length = 313
Score = 30.7 bits (66), Expect = 3.4
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -1
Query: 490 QSRHKMKLFSRFSVSFLTQLHGMSPCPLGLQQRYVQQSILGIVGRKV 350
+S K +L +F+ LTQ G P +Q+R +S G++ RKV
Sbjct: 204 ESAKKKQLIRQFNKQSLTQTPGREPSTSQVQKRARSRSFSGLIKRKV 250
>AK074122-1|BAB84948.1| 196|Homo sapiens FLJ00194 protein protein.
Length = 196
Score = 30.7 bits (66), Expect = 3.4
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -1
Query: 490 QSRHKMKLFSRFSVSFLTQLHGMSPCPLGLQQRYVQQSILGIVGRKV 350
+S K +L +F+ LTQ G P +Q+R +S G++ RKV
Sbjct: 87 ESAKKKQLIRQFNKQSLTQTPGREPSTSQVQKRARSRSFSGLIKRKV 133
>BC099639-1|AAH99639.3| 401|Homo sapiens heparan sulfate
6-O-sulfotransferase 1 protein.
Length = 401
Score = 29.5 bits (63), Expect = 7.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 505 CTCFLQSRHKMKLFSRFSVSFLTQLH 428
CTC+ +R + LFSRFS + LH
Sbjct: 115 CTCYRPNRRETWLFSRFSTGWSCGLH 140
>BC099638-1|AAH99638.3| 401|Homo sapiens heparan sulfate
6-O-sulfotransferase 1 protein.
Length = 401
Score = 29.5 bits (63), Expect = 7.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 505 CTCFLQSRHKMKLFSRFSVSFLTQLH 428
CTC+ +R + LFSRFS + LH
Sbjct: 115 CTCYRPNRRETWLFSRFSTGWSCGLH 140
>BC096240-1|AAH96240.3| 401|Homo sapiens heparan sulfate
6-O-sulfotransferase 1 protein.
Length = 401
Score = 29.5 bits (63), Expect = 7.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 505 CTCFLQSRHKMKLFSRFSVSFLTQLH 428
CTC+ +R + LFSRFS + LH
Sbjct: 115 CTCYRPNRRETWLFSRFSTGWSCGLH 140
>BC096239-1|AAH96239.3| 401|Homo sapiens heparan sulfate
6-O-sulfotransferase 1 protein.
Length = 401
Score = 29.5 bits (63), Expect = 7.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 505 CTCFLQSRHKMKLFSRFSVSFLTQLH 428
CTC+ +R + LFSRFS + LH
Sbjct: 115 CTCYRPNRRETWLFSRFSTGWSCGLH 140
>AC017079-2|AAY14736.1| 401|Homo sapiens unknown protein.
Length = 401
Score = 29.5 bits (63), Expect = 7.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 505 CTCFLQSRHKMKLFSRFSVSFLTQLH 428
CTC+ +R + LFSRFS + LH
Sbjct: 115 CTCYRPNRRETWLFSRFSTGWSCGLH 140
>AB006179-1|BAA25760.1| 410|Homo sapiens heparan-sulfate
6-sulfotransferase protein.
Length = 410
Score = 29.5 bits (63), Expect = 7.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 505 CTCFLQSRHKMKLFSRFSVSFLTQLH 428
CTC+ +R + LFSRFS + LH
Sbjct: 124 CTCYRPNRRETWLFSRFSTGWSCGLH 149
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,369,725
Number of Sequences: 237096
Number of extensions: 1612705
Number of successful extensions: 7256
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 6706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7228
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5251598958
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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