Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11n02f
(541 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78198-7|CAB01573.1| 622|Caenorhabditis elegans Hypothetical pr... 55 4e-08
AY081844-1|AAL91661.1| 362|Caenorhabditis elegans heparan 6-O s... 30 1.2
AC024755-9|AAF59640.2| 362|Caenorhabditis elegans Heparan sulph... 30 1.2
Z75552-8|CAD54158.1| 939|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z75552-7|CAA99943.3| 944|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z75539-5|CAD54134.1| 939|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z75539-4|CAA99846.3| 944|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z81100-1|CAB03194.1| 331|Caenorhabditis elegans Hypothetical pr... 28 3.7
AL110484-17|CAB54408.1| 586|Caenorhabditis elegans Hypothetical... 27 6.5
Z37983-6|CAB54188.2| 133|Caenorhabditis elegans Hypothetical pr... 27 8.6
AL110472-1|CAB54318.2| 133|Caenorhabditis elegans Hypothetical ... 27 8.6
>Z78198-7|CAB01573.1| 622|Caenorhabditis elegans Hypothetical
protein F55C5.8 protein.
Length = 622
Score = 54.8 bits (126), Expect = 4e-08
Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 5/136 (3%)
Frame = +2
Query: 149 KNEKAPILLNLEIFRITRDSQQQHGLRHADYQXXXXXXXXXXXXXXXXXXXPQGDR-RHY 325
+ E+ P + I ++ +D+QQQHGLRH DY +
Sbjct: 10 ETEELPPFPTVHILQVVKDAQQQHGLRHGDYARYRKYCAAKLERMRKALKFTNSHNCQKK 69
Query: 326 RRRDVTTTHLTAXNAEN-RLLYIPLLQAERAWAHAM--QLRQEANTE-PRKKFHLVSRLK 493
R+ L+ + +N + L + ++ER +A AM ++ E N E RKKF +++ L+
Sbjct: 70 RKAKFVKKWLSVESVQNVQFLNFGIFESERRYAEAMIDKITLEDNPEKSRKKFSMINSLR 129
Query: 494 KACAHGQMLLQLCEES 541
KA H L ++ +ES
Sbjct: 130 KAVLHATNLEKIVQES 145
>AY081844-1|AAL91661.1| 362|Caenorhabditis elegans heparan 6-O
sulfotransferase HST-6 protein.
Length = 362
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 529 KLQKHLPMCTCFLQSRHKMKLFSRFSVSFLTQLH 428
K Q H C C +S ++ LFSR+S ++ LH
Sbjct: 108 KCQAHKKRCNCGRRSSNETWLFSRYSTGWVCGLH 141
>AC024755-9|AAF59640.2| 362|Caenorhabditis elegans Heparan
sulphotransferase protein 6 protein.
Length = 362
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 529 KLQKHLPMCTCFLQSRHKMKLFSRFSVSFLTQLH 428
K Q H C C +S ++ LFSR+S ++ LH
Sbjct: 108 KCQAHKKRCNCGRRSSNETWLFSRYSTGWVCGLH 141
>Z75552-8|CAD54158.1| 939|Caenorhabditis elegans Hypothetical
protein F28C1.3b protein.
Length = 939
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +2
Query: 98 ESEIENGKVTAVENSDKKNEKAPILLNLEIFRITRDSQQQHGLR 229
ES++EN +V + NEK+P++ + +++R + Q +R
Sbjct: 549 ESKLENEEVGVSKPESNNNEKSPLMASSSTSKLSRKERHQRFVR 592
>Z75552-7|CAA99943.3| 944|Caenorhabditis elegans Hypothetical
protein F28C1.3a protein.
Length = 944
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +2
Query: 98 ESEIENGKVTAVENSDKKNEKAPILLNLEIFRITRDSQQQHGLR 229
ES++EN +V + NEK+P++ + +++R + Q +R
Sbjct: 554 ESKLENEEVGVSKPESNNNEKSPLMASSSTSKLSRKERHQRFVR 597
>Z75539-5|CAD54134.1| 939|Caenorhabditis elegans Hypothetical
protein F28C1.3b protein.
Length = 939
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +2
Query: 98 ESEIENGKVTAVENSDKKNEKAPILLNLEIFRITRDSQQQHGLR 229
ES++EN +V + NEK+P++ + +++R + Q +R
Sbjct: 549 ESKLENEEVGVSKPESNNNEKSPLMASSSTSKLSRKERHQRFVR 592
>Z75539-4|CAA99846.3| 944|Caenorhabditis elegans Hypothetical
protein F28C1.3a protein.
Length = 944
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +2
Query: 98 ESEIENGKVTAVENSDKKNEKAPILLNLEIFRITRDSQQQHGLR 229
ES++EN +V + NEK+P++ + +++R + Q +R
Sbjct: 554 ESKLENEEVGVSKPESNNNEKSPLMASSSTSKLSRKERHQRFVR 597
>Z81100-1|CAB03194.1| 331|Caenorhabditis elegans Hypothetical
protein K08G2.7 protein.
Length = 331
Score = 28.3 bits (60), Expect = 3.7
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -1
Query: 166 GCLLIFLIRIFYRCHLSIFNFTLLTYHINMNNQCLSYVLKTIFF 35
G LIFL + C+LSIF F L +H+N + + V I++
Sbjct: 28 GIPLIFL----WFCYLSIFPFFLAVFHLNKEKEKETAVYHIIYY 67
>AL110484-17|CAB54408.1| 586|Caenorhabditis elegans Hypothetical
protein Y38E10A.17 protein.
Length = 586
Score = 27.5 bits (58), Expect = 6.5
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +2
Query: 83 NMVGQESEIENGKVTAVENSDKKNEKAPILLNLEIFRITRDSQQQHGLRHAD 238
N++ + E NGKV E KK + + + ++ T D ++ GLRH +
Sbjct: 63 NILCNKCERVNGKVKRCEAHKKKRKARKVRKDGDVADDTSDREKLGGLRHVN 114
>Z37983-6|CAB54188.2| 133|Caenorhabditis elegans Hypothetical
protein B0393.8 protein.
Length = 133
Score = 27.1 bits (57), Expect = 8.6
Identities = 9/33 (27%), Positives = 19/33 (57%)
Frame = +2
Query: 389 IPLLQAERAWAHAMQLRQEANTEPRKKFHLVSR 487
+P + + W+H+ ++ QE NT+ R + + R
Sbjct: 32 LPKMSLSQPWSHSFEICQEHNTQKRISYSRLHR 64
>AL110472-1|CAB54318.2| 133|Caenorhabditis elegans Hypothetical
protein VB0393L.2 protein.
Length = 133
Score = 27.1 bits (57), Expect = 8.6
Identities = 9/33 (27%), Positives = 19/33 (57%)
Frame = +2
Query: 389 IPLLQAERAWAHAMQLRQEANTEPRKKFHLVSR 487
+P + + W+H+ ++ QE NT+ R + + R
Sbjct: 32 LPKMSLSQPWSHSFEICQEHNTQKRISYSRLHR 64
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,141,434
Number of Sequences: 27780
Number of extensions: 238375
Number of successful extensions: 692
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -