Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n02f
         (541 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61970.1 68418.m07778 signal recognition particle-related / S...    69   2e-12
At4g37990.1 68417.m05368 mannitol dehydrogenase, putative (ELI3-...    28   3.5  
At4g37980.1 68417.m05367 mannitol dehydrogenase, putative (ELI3-...    28   3.5  
At5g20330.1 68418.m02419 beta-1,3-glucanase (BG4) identical to t...    28   4.6  
At1g80070.1 68414.m09373 splicing factor, putative strong simila...    28   4.6  

>At5g61970.1 68418.m07778 signal recognition particle-related /
           SRP-related low similarity to Signal recognition
           particle 68 kDa protein (SRP68) from Homo sapiens
           SP|Q9UHB9, Canis familiaris SP|Q00004
          Length = 605

 Score = 68.9 bits (161), Expect = 2e-12
 Identities = 43/145 (29%), Positives = 70/145 (48%), Gaps = 4/145 (2%)
 Frame = +2

Query: 110 ENGKVTAVENSDKKNEKAPILL---NLEIFRITRDSQQQHGLRHADYQXXXXXXXXXXXX 280
           +  +++A+E  D K+E +  +L   ++ + ++ + SQ QHGLRH DY             
Sbjct: 4   KQSEISAMEIDDPKSESSDQILPRFSINVLQLMKSSQAQHGLRHGDYARYRRYCSARLRR 63

Query: 281 XXXXXXXPQGDRRHYRRRDVTTTHLTAXNAENRLLYIPLLQAERAWAHAMQLRQ-EANTE 457
                    G R  Y RR +  + +T    + R L++    AERAW+HAM+ RQ      
Sbjct: 64  LYKSLKFTHG-RGKYTRRAILESTVT----DVRFLHVVFYMAERAWSHAMEKRQLPDGPN 118

Query: 458 PRKKFHLVSRLKKACAHGQMLLQLC 532
            R++ +LV RL+KA     +   LC
Sbjct: 119 ARQRIYLVGRLRKAVKWASLFSSLC 143


>At4g37990.1 68417.m05368 mannitol dehydrogenase, putative (ELI3-2)
           identical to GI:16269
          Length = 359

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 119 KVTAVENSDKKNEKAPILLNLEIFRITRDSQQ 214
           KVT +  S+KK ++A   L  + F ++RD +Q
Sbjct: 205 KVTVISTSEKKRDEAINRLGADAFLVSRDPKQ 236


>At4g37980.1 68417.m05367 mannitol dehydrogenase, putative (ELI3-1)
           identical to GI:16267
          Length = 357

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 119 KVTAVENSDKKNEKAPILLNLEIFRITRDSQQ 214
           KVT +  S++K ++A   L  + F ++RD +Q
Sbjct: 205 KVTVISTSERKRDEAVTRLGADAFLVSRDPKQ 236


>At5g20330.1 68418.m02419 beta-1,3-glucanase (BG4) identical to to
           plant beta-1,3-glucanase bg4 GI:2808438 from
           [Arabidopsis thaliana]
          Length = 345

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 22/92 (23%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
 Frame = -1

Query: 454 SVSFLTQLHGMSPCPLGLQQRYVQQSILGIVGRKVGSCDITTTV-MASVSLWYFEYFSQ- 281
           +++F+T  + + P P+G Q   V QS+  +V  +     I+T V M+++   Y       
Sbjct: 119 NITFITVGNEVIPGPIGPQVLPVMQSLTNLVKSRNLPISISTVVAMSNLEQSYPPSAGMF 178

Query: 280 SSYAARTIATISLIISMSETMLLLTVSCYPKY 185
           +S A   +  +  ++S + T +L+ +  Y  Y
Sbjct: 179 TSQAREQLVPVLKLLSQTSTPILVNIYPYFAY 210


>At1g80070.1 68414.m09373 splicing factor, putative strong similarity
            to splicing factor Prp8 [Homo sapiens] GI:3661610;
            contains Pfam profile PF01398: Mov34/MPN/PAD-1 family
          Length = 2382

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 12/67 (17%)
 Frame = +2

Query: 302  PQGDRRHYRRRDVTTTHLTA--XNAENRLL-----YI-----PLLQAERAWAHAMQLRQE 445
            PQ D R+ ++ DV  TH  +   + E++L+     YI       + ++R WA     RQE
Sbjct: 1383 PQSDLRYSKQTDVGVTHFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQE 1442

Query: 446  ANTEPRK 466
            A  + R+
Sbjct: 1443 AQAQNRR 1449


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,217,471
Number of Sequences: 28952
Number of extensions: 212703
Number of successful extensions: 522
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)